PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG003421.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 280aa MW: 29170.6 Da PI: 7.219 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.7 | 2.1e-05 | 149 | 170 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg++F ++ H+r H CCG003421.1 149 TCSTCGRTFASWKAVFGHMRAH 170 6*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.995 | 148 | 170 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 150 | 170 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MTNNNNNDNK DAAAIPDKAT EHSEAANSPR RNPNDQEEAI APPRPTVQRS TLETGGPSSV 60 SGPAGPAGTE VGASPAAVTL TSGASPSTPV RIGGSGTAVV DPSTTVAATG VAGEGSSSRK 120 RSGKGEESSP HVSKKAKGEM DINPDAEPTC STCGRTFASW KAVFGHMRAH PDRGWRGAFP 180 PPEWSPEKPT DQQGDQSALR SQLAPRLLNL AINTLNRMKH DQGHEAGSST NRRNFDLNTE 240 PPRESESNSG SSSPPSSGNR FDLNKPPKAD HNNGNEGASK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011022151.1 | 0.0 | PREDICTED: uncharacterized protein LOC105124026 | ||||
TrEMBL | B9H661 | 1e-169 | B9H661_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s10330.1 | 1e-170 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10202 | 21 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35700.1 | 3e-14 | C2H2 family protein |