PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003376.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 319aa    MW: 35536.2 Da    PI: 6.06
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003376.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.1e-12142188455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h + Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  CCG003376.1 142 SHAIEERNRREKLSQRFIALSAVVPGL-----KKMDKASVLGDAIKYLKYLQ 188
                  899************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.745138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-16141203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9142188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-16142200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.11E-12142192No hitNo description
SMARTSM003533.0E-13144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
METSPAAWLS DEMGMEEYSA FGHVRYDTNP LDYSIDEFNF QTFPSKCFSM NDQTFNHQAP  60
QNFTCASSIS SQVSIDQRPA KQPKNSQQAP PSSSSHVISF DNSSPPPASS LQYFGSTNYE  120
DGATYFRKAG TKKIATTSKS PSHAIEERNR REKLSQRFIA LSAVVPGLKK MDKASVLGDA  180
IKYLKYLQER VKTLEEQAAK KTMESAVFVK KSMVCIADDS SSSTDENPAG GCRDYPLPEI  240
EITVSDEDVL IRILCENQKG CLTKILTEME KLHLKVINSV VMPFGNYTLD VTIVAQMDVD  300
FSMTLKDLVK NLRRALLQG
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2167700.0AC216770.1 Populus trichocarpa clone POP051-A24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022082.10.0PREDICTED: transcription factor bHLH25-like
SwissprotQ9T0725e-67BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A3N7EXB70.0A0A3N7EXB7_POPTR; Uncharacterized protein
STRINGPOPTR_0005s09810.11e-170(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-69bHLH family protein