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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG003310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 369aa MW: 40505 Da PI: 6.5161 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 150 | 199 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrd + + r++lg+f+tae Aa+a+++a+++++g CCG003310.1 150 KYRGVRQRP-WGKWAAEIRDpF-----KaCRVWLGTFDTAEAAARAYDEAALRFRG 199 8********.**********66.....56*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.1E-33 | 149 | 208 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-14 | 150 | 199 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.18E-21 | 150 | 209 | No hit | No description |
SMART | SM00380 | 8.2E-37 | 150 | 213 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.409 | 150 | 207 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-22 | 150 | 208 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.8E-11 | 151 | 162 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-11 | 173 | 189 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009749 | Biological Process | response to glucose | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MCKLKVANKG DKIVKKEAGS VEEWPLPVML SGLNREREMS VMVTALTHVV AGNVPADDSD 60 CITEAVPNNQ DNCAHGDLSA KREREEGGGG SEEYKRHGRA FGDDFLHGGS SSAGRASGKS 120 IITMAPAATR MAFTPVYEYN ETCRDEPRRK YRGVRQRPWG KWAAEIRDPF KACRVWLGTF 180 DTAEAAARAY DEAALRFRGN KAKLNFPENV KLRPTPPDPI ANQLTVSDSP SSTVLLSVPT 240 STEAIVHSQA LHHTQNREIS REQVNQPQLI LGVGGYQRQP MSLYDQMFLS PPLVSSYPSM 300 SSSTEYSDPM FLAAQQPGEI MPATSSQSGG GGIQWXXXXX XXXXISQSGG EEFQWPAWSD 360 YSHYTSSSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-22 | 149 | 210 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00584 | DAP | Transfer from AT5G64750 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011021970.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X2 | ||||
TrEMBL | A0A3N7EX28 | 0.0 | A0A3N7EX28_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s08940.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4933 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 3e-21 | ethylene response factor 110 |