PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003261.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 371aa    MW: 41450.9 Da    PI: 7.1198
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003261.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.55.3e-1284124242
                  XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 
                  +++k++rr+++NReAAr+sR+RKka++++Le    +L +  
  CCG003261.1  84 PSDKVQRRLAQNREAARKSRLRKKAYVQQLESSRTKLLQLE 124
                  689****************************8655555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.9E-978132No hitNo description
SMARTSM003381.3E-683146IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.12885127IPR004827Basic-leucine zipper domain
PfamPF001709.5E-985121IPR004827Basic-leucine zipper domain
CDDcd147083.24E-2287139No hitNo description
SuperFamilySSF579593.8E-787127No hitNo description
PROSITE patternPS00036090105IPR004827Basic-leucine zipper domain
PfamPF141441.3E-27173248IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MNSTSTQFVT SGRMGIYDPM HQIGMWGENF KSNRNTSTMF IAGNPNPSAS IIIAPDTKLD  60
DQSEDTSHGT LGPSNKYDQE ASKPSDKVQR RLAQNREAAR KSRLRKKAYV QQLESSRTKL  120
LQLEQELDRA RQQGLYIGGG VDTSQLGFGG VTSSGILTFE MEYGQWLEEQ NRHICDMRIA  180
LNAHISDTEL GILVESGMSH YFELFRMKAT AAKTDVFYVM SGLWKSSAER ILLWIGGFRP  240
SELLKILLPH IEPLSEHQAM NATSLEKSCQ QAEDAISQGM AKLQQTLAET VAAGHLGEAS  300
YSPHKETAME KLEGLVRFVE QADHLRQETL RQMSRILTAH QAARGLLALG EYFQRLRALS  360
SLWATRPCEP A
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00586DAPTransfer from AT5G65210Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1951190.0EF195119.1 Populus tremula x Populus alba TGA transcription factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021894.10.0PREDICTED: transcription factor TGA1-like
RefseqXP_011021897.10.0PREDICTED: transcription factor TGA1-like
RefseqXP_011021898.10.0PREDICTED: transcription factor TGA1-like
RefseqXP_011021899.10.0PREDICTED: transcription factor TGA1-like
RefseqXP_011021900.10.0PREDICTED: transcription factor TGA1-like
RefseqXP_011021901.10.0PREDICTED: transcription factor TGA1-like
SwissprotQ392371e-180TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A2K2ADF10.0A0A2K2ADF1_POPTR; Uncharacterized protein
STRINGPOPTR_0005s08370.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109634104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.50.0bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]