PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003191.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 606aa    MW: 65602.6 Da    PI: 7.0981
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003191.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.5e-31342400259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  CCG003191.1 342 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDKTILITTYEGNHNHP 400
                  7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-33326402IPR003657WRKY domain
SuperFamilySSF1182909.42E-28334402IPR003657WRKY domain
PROSITE profilePS5081129.723336402IPR003657WRKY domain
SMARTSM007747.7E-37341401IPR003657WRKY domain
PfamPF031061.7E-26343400IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MDKGWGLTLA SDPVSVFSSN NSNNSPVGSF LKVKRDFSSD HNMADSRNIN NSMFQFPVSL  60
SAGKEEVSSA AAQEVDFFKE KINRVDHGHD SKSTSVIVKK ENSLAEVAPR SSAPLDVNTG  120
LHLLTANARS DQSTVDDGVS SDGDDKRSKN VELAQLQVEL QKMNAENQRL KDMLSQVTNN  180
YSALQMHFVA LIQQQQQRNH GVESDKKQET VDAKSSEEKK HEMVPRQFMD LGPSAETDEI  240
SNSSSEERTR SVTPQNHFEV ASTKNNGKLE MAPHDQENSS FRDGKRIGDE SPESESQGWN  300
PNKVQKLNPA SSANKAIEQS AEATMRKARV SVRARSEAPM ISDGCQWRKY GQKMAKGNPC  360
PRAYYRCTMA VGCPVRKQVQ RCAEDKTILI TTYEGNHNHP LPPAAMTMAS TTAAAATMLL  420
SGSMSSADGM MNPNLLARAI LPGCSSSMAT ISASAPFPTV TLDLTQNTNP LQFQRPPTHF  480
QVPFPGQPQN FALVTAPQLP QVFGQALYNQ SKFSGLHLSQ DTVSSQLGHQ AQPQIFHSGQ  540
QPSLSHDTLS AATAAITADP NFTAALAAAI SSIIGGANSN STTTTTNTNN NNNNSNSNAT  600
NTSNRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22328404176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774480.0GQ377448.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 28 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011046963.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ9XEC31e-162WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A2K2AN650.0A0A2K2AN65_POPTR; Uncharacterized protein
STRINGPOPTR_0004s00890.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86634121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-135WRKY family protein