PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

CCG003134.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 188aa MW: 22128.3 Da PI: 9.7806

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG003134.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.6	4.8e-24	11	100	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++ +GF+vr++++++s+ n++++ ++fvCskeg+r+++ + +++ + + tr gC a++++ ++ gkw+vtk+++eH+H+l+ CCG003134.1 11 EFYISYGRCTGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVHrKDR--IlpPPPITREGCGAMIRLALK-GGKWVVTKFVKEHTHKLM 100 6****************************************98882233..244899***********.**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-21	11	100	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MEFNSRDEAR EFYISYGRCT GFTVRIHHNR RSRVNNQVIG QDFVCSKEGF RAKKYVHRKD 60 RILPPPPITR EGCGAMIRLA LKGGKWVVTK FVKEHTHKLM SPSKVPWRGS GKQLISEDEK 120 DKRIRELSLE LYNERQKCKR RCAVYEEQLN MILQDLEKHT EHVSKKVDDV VKSIREIEEQ 180 HSDDTSSE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011012931.1	1e-138	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_011012932.1	1e-138	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_011026428.1	1e-138	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_011026429.1	1e-138	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	B9HH49	1e-135	B9HH49_POPTR; Uncharacterized protein
STRING	POPTR_0007s01940.1	1e-135	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8861	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	5e-36	FAR1 family protein