PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002785.3
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CPP
Protein Properties Length: 477aa    MW: 52905.8 Da    PI: 6.9237
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002785.3genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.51.5e-1491130242
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                  ++++C+Ck+skClk+YCeCfa+g++C+e C+C dC+N+ e+
  CCG002785.3  91 SHRQCHCKQSKCLKLYCECFASGSYCDE-CSCADCHNNVEN 130
                  5789***********************9.********9875 PP
2TCR45.51.5e-14176210236
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedC 36 
                  + kgC+Ck++ ClkkYCeCf+a+  Cse+CkCed 
  CCG002785.3 176 HIKGCHCKRTGCLKKYCECFQANILCSENCKCEDA 210
                  789*****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.2E-1590130IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163432.7491215IPR005172CRC domain
PfamPF036381.5E-1193127IPR005172CRC domain
SMARTSM011148.2E-15175215IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.8E-11178209IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MTSFFPPETV ESVKGELGKS DFTPRKLVFT EFGLSPVVSA SQLHTSPQER LFLQTKLHVL  60
PRSPLSFKKS ESPRISLPQA RTKIINGTPK SHRQCHCKQS KCLKLYCECF ASGSYCDECS  120
CADCHNNVEN EDVRREAAEC ILERNPNAFK PKITGSPCTP ADDGDAAKDV LVMAKHIKGC  180
HCKRTGCLKK YCECFQANIL CSENCKCEDA NSSSAVVSSS HIFSQESRKR TFRELFDSNM  240
RDTEIHEFTK HHAVNPVGVH VSIPTLHADC VCQIASSAAL GSSKLTSRSL LADAIHPLDT  300
RELCSLLVVV SEAAQFLADE HCKERIKEVK EYQMACDLEK DCKKEPDVHQ VVPHNQFPGS  360
QTDTTVMDNS RSCDSGMQDG GPFSSEGDYL MGDKKDQLFT RSASLDQNLN HGCNENFTKE  420
HERLVLTCLR DCLGKLIAFG TMKESCCNDM VKSHGRDDPE AFRPEAKSSP PSGHSRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-219520714115Protein lin-54 homolog
5fd3_B2e-219520714115Protein lin-54 homolog
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090000.0AC209000.1 Populus trichocarpa clone POP023-H09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299717.30.0protein tesmin/TSO1-like CXC 6
TrEMBLA0A3N7EAL70.0A0A3N7EAL7_POPTR; Uncharacterized protein
STRINGPOPTR_0001s18550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2255944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.12e-78Tesmin/TSO1-like CXC domain-containing protein