PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG002690.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 408aa MW: 45861 Da PI: 8.1121

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG002690.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.4	1.4e-30	17	117	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+C+++rr+C++dC+++pyfp +++++f+ ++++FG+sn+ ++l++l+ ++r++a++s+++eA ++ +d ++G +g ++kl +q+k+e +ll+ CCG002690.1 17 KCASCRHQRRRCPNDCIFRPYFPLRKQEEFESARRIFGVSNMERMLRSLEVQDRTKAVESMIWEASCWSKDSINGPLGCLKKLIDSERQAKQENQLLR 114 5********************************************************************************************99999 PP DUF260 99 eel 101 ++l CCG002690.1 115 KQL 117 875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.639	16	117	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.4E-29	17	113	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MSAGGIIEGN SSNSASKCAS CRHQRRRCPN DCIFRPYFPL RKQEEFESAR RIFGVSNMER 60 MLRSLEVQDR TKAVESMIWE ASCWSKDSIN GPLGCLKKLI DSERQAKQEN QLLRKQLDNL 120 SQSGRSTLAE EKQQNQTYEQ LLSMEGSAND KVYVIPNSSI ATNYYFDSEG GMELHSQGNS 180 HTRCGSVNPQ EIEGGRFLHT MLQYSPFPNY EINGITHVRN ISNHGNVAQA PSTPSPTVQM 240 QQRRNQESRH QAANPSLPIN LREIDQGRTI VSLSQVNPFP YLYGNETYVG YIGLGDHIGQ 300 VPSVHSPIVQ AHQIRNQLDE VSSQAAFFNI PLANHHQESL PSAYNHQWRG FHVHGQAVVN 360 PTIVHAQQML GQRVDSHRSA NVAPQPSRVR GTNVLQAPYH VDNQNNVQ

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MSAGGIIEGN SSNSASKCAS CRHQRRRCPN DCIFRPYFPL RKQEEFESAR RIFGVSNMER  60
MLRSLEVQDR TKAVESMIWE ASCWSKDSIN GPLGCLKKLI DSERQAKQEN QLLRKQLDNL  120
SQSGRSTLAE EKQQNQTYEQ LLSMEGSAND KVYVIPNSSI ATNYYFDSEG GMELHSQGNS  180
HTRCGSVNPQ EIEGGRFLHT MLQYSPFPNY EINGITHVRN ISNHGNVAQA PSTPSPTVQM  240
QQRRNQESRH QAANPSLPIN LREIDQGRTI VSLSQVNPFP YLYGNETYVG YIGLGDHIGQ  300
VPSVHSPIVQ AHQIRNQLDE VSSQAAFFNI PLANHHQESL PSAYNHQWRG FHVHGQAVVN  360
PTIVHAQQML GQRVDSHRSA NVAPQPSRVR GTNVLQAPYH VDNQNNVQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-14	11	118	5	105	LOB family transfactor Ramosa2.1
5ly0_B	2e-14	11	118	5	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216917	0.0	AC216917.1 Populus trichocarpa clone POP066-L06, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	POPTR_0011s06000.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF28066	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	7e-21	LOB domain-containing protein 2