PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG002572.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 184aa MW: 20956.3 Da PI: 10.089 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.4 | 3.5e-10 | 14 | 63 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54 + +E++RR ++++ ++L +l+P+ + k+++ ls + Le+A YIk++ CCG002572.1 14 KTVEKNRRVHMKDLCFKLASLVPHHFfKPSKDMLSQQDQLELAACYIKQM 63 679*********************663666666***************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.18E-5 | 6 | 68 | No hit | No description |
PROSITE profile | PS50888 | 9.426 | 8 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-10 | 12 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-10 | 12 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-6 | 14 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 184 aa Download sequence Send to blast |
MKRSNSETSK LDRKTVEKNR RVHMKDLCFK LASLVPHHFF KPSKDMLSQQ DQLELAACYI 60 KQMRERVEKL KRAKEQAITT IQTSRSSMAS MMIGLRLPVI ELRDFGSSIE VVLVSGLNKN 120 FMFYEVISVL SDEGAEVVSA SYSTVGDKVF HTIHAQNFQS WCGDFKSVGK IARTNFLGVC 180 IWGR |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028585.1 | 1e-111 | PREDICTED: uncharacterized protein LOC105128559 | ||||
TrEMBL | B9IEQ2 | 1e-106 | B9IEQ2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s08580.1 | 1e-107 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6849 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20970.1 | 1e-31 | bHLH family protein |