PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002418.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 486aa    MW: 53727.7 Da    PI: 5.9509
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002418.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-1659103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT+eE++++++a k++G   W++I +++g ++t+ q++s+ qk+
      CCG002418.1  59 RERWTEEEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 103
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-1653107IPR009057Homeodomain-like
PROSITE profilePS5129421.47654108IPR017930Myb domain
TIGRFAMsTIGR015575.7E-1757106IPR006447Myb domain, plants
SMARTSM007172.5E-1358106IPR001005SANT/Myb domain
PfamPF002495.7E-1459102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-95999IPR009057Homeodomain-like
CDDcd001673.24E-1061104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MQDECGGTRL NLVLPAGNGI SLSATLNNAS GQQIKEQFSC GSDFSSPKAR KPYTITKQRE  60
RWTEEEHKKF LEALKLYGRA WRRIEEHVGT KTAVQIRSHA QKFFSKVVRE SGDSNTSSVE  120
SIEIPPPRPK RKPMHPYPRK LAHPLEKELL IPEKSLRSSS PNFSISEQEN QSPTSVLSAV  180
GSDALGSTDS DTANHSLSPV SFAGGVHHAD SSPEEDGYPS PATASSVPDE QFPKVEKLDS  240
SPKENVSSEE PVVEETSTRS LKLFGWTVLV TECHKPSSPN VGTSKLSTLD TAEEKLVRPL  300
TLNNVAAEFP SRNGESTWSP LPHGSHGALC YMKFQKENSS PAQNDSATLP WWTFYGAMPF  360
PCIPFHKKEH AIENLDSKGD EVQDKEIPKE VSWTGSTSGS VSEGENGDKN MDAETESQQF  420
SYEEKEISPI FELKLTKKSA SSGSEVINEK CPKGFVPYKK RIAERDSQSS TITSEEREEQ  480
RIRLCL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035339.10.0PREDICTED: protein REVEILLE 1-like isoform X2
TrEMBLA0A2K2AR850.0A0A2K2AR85_POPTR; Uncharacterized protein
STRINGPOPTR_0004s07270.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.16e-53MYB_related family protein