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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG002403.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 228aa MW: 25586.5 Da PI: 10.2925 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.9 | 7.9e-21 | 27 | 77 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAaka+++a+++++g+ CCG002403.1 27 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDKAAREYRGA 77 69*******.**********8...557**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.77E-28 | 27 | 84 | No hit | No description |
PROSITE profile | PS51032 | 23.788 | 27 | 84 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.0E-14 | 27 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-22 | 27 | 86 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-35 | 27 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-32 | 27 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-11 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-11 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MAPKKLNASN SSCFKKTSGD HDKKEIHYRG VRKRPWGRYA AEIRDPGKKS RVWLGTFDTA 60 EEAAKAYDKA AREYRGAKAK TNFPFSGEVV NYDDDKQSSS QSSTVESSSS PVVSAAVTRQ 120 VGGGGAGGVV GMGAFPFVYQ QQQQXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 180 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XRSQIPFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-22 | 27 | 88 | 5 | 70 | ATERF1 |
3gcc_A | 1e-22 | 27 | 88 | 5 | 70 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011029083.1 | 1e-100 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A1L6K5P3 | 5e-67 | A0A1L6K5P3_POPTO; Uncharacterized protein | ||||
STRING | POPTR_0017s04540.1 | 2e-67 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 6e-27 | erf domain protein 9 |