PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002403.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 228aa    MW: 25586.5 Da    PI: 10.2925
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002403.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.97.9e-212777256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAaka+++a+++++g+
  CCG002403.1 27 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDKAAREYRGA 77
                 69*******.**********8...557**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.77E-282784No hitNo description
PROSITE profilePS5103223.7882784IPR001471AP2/ERF domain
PfamPF008474.0E-142776IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-222786IPR016177DNA-binding domain
SMARTSM003801.9E-352790IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-322784IPR001471AP2/ERF domain
PRINTSPR003672.4E-112839IPR001471AP2/ERF domain
PRINTSPR003672.4E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAPKKLNASN SSCFKKTSGD HDKKEIHYRG VRKRPWGRYA AEIRDPGKKS RVWLGTFDTA  60
EEAAKAYDKA AREYRGAKAK TNFPFSGEVV NYDDDKQSSS QSSTVESSSS PVVSAAVTRQ  120
VGGGGAGGVV GMGAFPFVYQ QQQQXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XRSQIPFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-222788570ATERF1
3gcc_A1e-222788570ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029083.11e-100PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLA0A1L6K5P35e-67A0A1L6K5P3_POPTO; Uncharacterized protein
STRINGPOPTR_0017s04540.12e-67(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-27erf domain protein 9