PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002361.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family E2F/DP
Protein Properties Length: 459aa    MW: 51341.1 Da    PI: 4.9005
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002361.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.93e-27142206170
      E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70 
                  r+++sL+llt+kf+kl++++++g+++ln+ a+ L   +v  ++RRiYDi+NVLe+++liek++kn+irwk
  CCG002361.1 142 RYDNSLGLLTKKFVKLIQEAQDGTLDLNKTAEVL---EV--QKRRIYDITNVLEGIGLIEKTSKNHIRWK 206
                  689*******************************...99..****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.0E-28139206IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.06E-17142205IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.6E-34142207IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.3E-25144206IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440745.75E-25220322No hitNo description
CDDcd146604.86E-35222322No hitNo description
PfamPF164219.3E-22224320IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MANASEDPTR TINPSQFHFH LLHSHSHFQN QNLFSSSNNS TPSNRLFPSS FRKPHHPPPP  60
PPSPPPDNNK TPIGFQFHSS NTHSAFRDVA LGMKSESDDH EVWTNRDTAF PAQSDIVTDQ  120
TLTRWSSSGE SPNGLNLASG CRYDNSLGLL TKKFVKLIQE AQDGTLDLNK TAEVLEVQKR  180
RIYDITNVLE GIGLIEKTSK NHIRWKKEFD DCEQRMLDNH ARIKAEVESL YTEEFRLEES  240
IRDRQELLRR LKEDVVCRKH LFLTEEDITS LSCFQNQTLF TIKTPEASYL EVPDPDEDIG  300
SPLYKMTVRS TNGPIDVYLL SKCEQGEDIT MEHVEPMDTS TWNSSQCRDQ DAGLPSECQG  360
NQNSCCEPFS SLTLEASGIC KLIPADCNIV DDYWFTTDDS VSISKLVVGA VVSANVPTAG  420
QSERPSLGLG VNSGLGESRA SVLMTIWLPV LISNTHNPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A5e-23142206772PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028997.10.0PREDICTED: transcription factor E2FC isoform X1
TrEMBLA0A2K2BC950.0A0A2K2BC95_POPTR; Uncharacterized protein
STRINGPOPTR_0002s02500.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118852529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.23e-86E2F/DP family protein