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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
CCG002338.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 336aa MW: 37359.9 Da PI: 9.7484 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| CCG002338.1 | genome | LZU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 385.6 | 7.6e-118 | 1 | 336 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye.........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalll 86
mdd g+re r+k+ +y+ p++s+k q+m ++aerda+i+ern+alsekkaa+aerdma+lqrd+a+aern+al+erdn++++l++
CCG002338.1 1 MDDGGHREngRHKAdQYKtaqgqwlmqPQPSMK-----QIMGIMAERDAAIHERNMALSEKKAAIAERDMAYLQRDSAIAERNNALLERDNAIATLQY 93
9*****999*****9***776666654445555.....************************************************************ PP
GAGA_bind 87 vensla....salpvgvqvlsgtksidslqqlse...pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177
+ensl +++p+g + ++g+k++++ qq++ p++++ ++++re+++++a p++ +a+e++k+++++r+k+ ka+ +kk++ks +k
CCG002338.1 94 RENSLPsgniTTCPPGFNNSRGVKHMHHQQQQHAhhlPHMNEGPYGTREMQTSDAVPVSP---VASEVAKPQRGKRPKD---AKATPSNKKTSKSPRK 185
***987888899***************99995444799******************9876...5556666664444444...4444444445556666 PP
GAGA_bind 178 vkkesader...........................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvst 248
vk+es+d++ sk+++k +dl+ln+v++De+t+P+PvCsCtG+ rqCYkWGnGGWqS+CCttt+S+yPLP+++
CCG002338.1 186 VKRESEDTNmfgkshewkngqdmdgggddpnkqlaaSKSDWKGQDLGLNQVAFDETTMPAPVCSCTGVFRQCYKWGNGGWQSSCCTTTLSMYPLPAVP 283
7777766556777889999******************************************************************************* PP
GAGA_bind 249 krrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
++r+aR++grKmS++af+klL++L aeG dlsnpvDLkdhWAkHGtn++ ti+
CCG002338.1 284 NKRHARVGGRKMSGSAFSKLLSRLEAEGQDLSNPVDLKDHWAKHGTNRYTTIK 336
****************************************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 336 aa
Download sequence Send
to blast |
MDDGGHRENG RHKADQYKTA QGQWLMQPQP SMKQIMGIMA ERDAAIHERN MALSEKKAAI 60
AERDMAYLQR DSAIAERNNA LLERDNAIAT LQYRENSLPS GNITTCPPGF NNSRGVKHMH 120
HQQQQHAHHL PHMNEGPYGT REMQTSDAVP VSPVASEVAK PQRGKRPKDA KATPSNKKTS 180
KSPRKVKRES EDTNMFGKSH EWKNGQDMDG GGDDPNKQLA ASKSDWKGQD LGLNQVAFDE 240
TTMPAPVCSC TGVFRQCYKW GNGGWQSSCC TTTLSMYPLP AVPNKRHARV GGRKMSGSAF 300
SKLLSRLEAE GQDLSNPVDL KDHWAKHGTN RYTTIK
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ982263 | 0.0 | FJ982263.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds. |
