PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG002322.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

SRS

Protein Properties

Length: 318aa MW: 35000.5 Da PI: 8.3125

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG002322.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	226.4	5.2e-70	93	248	4	153
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.........aeaaskrkrelkskkqsalsstkls 92 g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++++++ + +++kr+re+ + +s+l++t+l+ CCG002322.1 93 GGMNCQDCGNQAKKDCPHSRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQNQEQQqqqqqqqqfRGENPKRQREN-QGGASSLACTRLA 189 789*************************************************999888776655555443333334444443.5556666677766 PP DUF702 93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++ + le++ +P+ev+s+avfrcv+vs++dd+e++laYqtav+igGhvf+GiLydqG+e CCG002322.1 190 ATT--SGLEMTAFPPEVNSQAVFRCVKVSALDDAEDQLAYQTAVNIGGHVFRGILYDQGPE 248 655..5688999*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.1E-67	94	248	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.3E-26	96	138	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.2E-26	199	247	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MAGWFYLGER EGPSSKQDQE KEVNNSSLFL YRSSNEEIYN NNKGFELWPQ YYPQQQNMNS 60 FSFGVGPSRR NFSDDHSPRL GFTVMRQGGG LGGGMNCQDC GNQAKKDCPH SRCRTCCKSR 120 GFQCQTHVKS TWVPAAKRRE RQQQLAALQQ QNQEQQQQQQ QQQQFRGENP KRQRENQGGA 180 SSLACTRLAA TTSGLEMTAF PPEVNSQAVF RCVKVSALDD AEDQLAYQTA VNIGGHVFRG 240 ILYDQGPEGR YTSTGGESSS SGAQQLGLIT TATTSTTATT TNTSNPAAGN TLFDPSSLYP 300 APLNAFIAGT QFFPPPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP011966	1e-124	AP011966.1 Jatropha curcas DNA, clone: JHL18I08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028944.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Swissprot	Q9LQZ5	1e-101	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A2K2BCI1	0.0	A0A2K2BCI1_POPTR; Uncharacterized protein
STRING	POPTR_0002s03000.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	4e-88	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]