PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002316.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 245aa    MW: 27027.4 Da    PI: 5.7485
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002316.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-193584255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  ykGVr++  +g+WvAeIr+p   + + +r +lg+++t  eAa a++aa++kl+g
  CCG002316.1 35 TYKGVRQRT-WGKWVAEIREP---N-CgARLWLGTYDTSHEAAMAYDAAARKLYG 84
                 69****999.**********8...3.57*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.18E-223494No hitNo description
SMARTSM003807.2E-373598IPR001471AP2/ERF domain
PROSITE profilePS5103221.8913592IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-293593IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-213592IPR016177DNA-binding domain
PfamPF008474.7E-143584IPR001471AP2/ERF domain
PRINTSPR003671.6E-93647IPR001471AP2/ERF domain
PRINTSPR003671.6E-95874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSGFGEKKQF KKPAQASSRK GCMRGKGGPE NALCTYKGVR QRTWGKWVAE IREPNCGARL  60
WLGTYDTSHE AAMAYDAAAR KLYGPEAKLN LPELQVNRSQ FPASPANSQV IQMTNQPSLL  120
IQNVIQMTNQ PSHLIQNSIC SSNIPNMESN EAKPILYNHN PIVSFSNESV DSNGMEVEND  180
ANFGRSGDVI KEFSANLNVN MTFNDSIWAE AALSINFPVM DDPGIFASNL MEGSGWDTLQ  240
APWCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-173692360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-1736100670ATERF1
3gcc_A3e-1736100670ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559611e-131EF155961.1 Populus trichocarpa putative DRE-binding protein 5 (DREB5) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302006.21e-151dehydration-responsive element-binding protein 2D
TrEMBLB9GRH71e-150B9GRH7_POPTR; Uncharacterized protein
STRINGPOPTR_0002s03090.11e-151(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.15e-50ERF family protein