PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002301.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 156aa    MW: 17880 Da    PI: 6.8042
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002301.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.28.4e-142987563
                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                 ++ +r+ +NRe+ArrsR RK++++  L+  v++L + N +   +++  +++  ++++e+
  CCG002301.1 29 RKRKRMLSNRESARRSRMRKQKYLGDLTAQVAQLRTDNNQILTTINVTTQHFLNVEAEN 87
                 67899***********************************9999998888877777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.5E-102477No hitNo description
SMARTSM003382.0E-172589IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.992790IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-132981No hitNo description
PfamPF001706.2E-112975IPR004827Basic-leucine zipper domain
CDDcd147021.78E-183080No hitNo description
PROSITE patternPS0003603247IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MASSSGNSSG STQLQNSGSE EQVMLVDQRK RKRMLSNRES ARRSRMRKQK YLGDLTAQVA  60
QLRTDNNQIL TTINVTTQHF LNVEAENSIL RAQMMELNHR LDSLNEILNY INTSNGIFEI  120
DHHEDLQTSA DHGFMNPLNL IYHNQPIMAS PDLFQY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12849RKRKRMLSNRESARRSRMRKQK
24148RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028895.11e-112PREDICTED: ocs element-binding factor 1-like
RefseqXP_011028896.11e-112PREDICTED: ocs element-binding factor 1-like
SwissprotC0Z2L51e-51BZP44_ARATH; bZIP transcription factor 44
TrEMBLB9GRK11e-107B9GRK1_POPTR; Uncharacterized protein
STRINGPOPTR_0002s03330.11e-108(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.19e-50basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]