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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG002297.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 423aa MW: 45870 Da PI: 7.6613 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.8 | 5.4e-05 | 310 | 349 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq CCG002297.2 310 ARKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 349 57788999*********998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.084 | 299 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0094 | 307 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-10 | 309 | 360 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.49E-5 | 311 | 353 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.3E-9 | 313 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MESANLHRQH DQLQDQFVGS SSLTTTTPSS YAEAGSTHAW TQTITQNSGN SSPNYNGVVF 60 NPRQKYESPV SSVNSTMIQD LGFQHWHNNA GSFNSLSAYH DLQLSKIKEE LSSDSFPKFT 120 EMLNSPSSTI EDPLPSSSSN FNSEKLLKTI SPGFPRHGHD QFSPREISSS HHNGSSFGSA 180 IPSGESFSQI YPSINISNLN QPSSPLISGS FDMNLQGLDL LTSTRFSGSF AQPSDDPLAM 240 FNKDSLSFGL DRMQLASQRP SCRPNKISST NEMTEAKRPN NSLMEPKATQ AAAPKKSRLE 300 SRVSCPPLKA RKEKLGDRIA ALQQLVAPFG KTDTASVLME AIGYIKFLQN QVETLSIPYM 360 KSSGNKTSRS IQAAASNLGD IEEPKRDLRS RGLCLVPLSC MSYVTSDGGG GGIWPPPNFG 420 GGT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028888.1 | 0.0 | PREDICTED: transcription factor bHLH110-like isoform X2 | ||||
TrEMBL | A0A2K2BCS5 | 0.0 | A0A2K2BCS5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s03380.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4045 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27660.1 | 3e-72 | bHLH family protein |