PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG002260.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 274aa MW: 31607.6 Da PI: 5.6207

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG002260.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.9	1.2e-50	10	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrF P+deelv++yL kk++++++ ++ e+d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd++vl+ ++ CCG002260.1 10 LPPGFRFYPNDEELVCHYLYKKITNEEVLK-GTLVEIDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDPtTR 106 79**********************9655.78***********88888999**********************************9778 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 e+vg++ktLvfyk+rap+g kt W+mhe+rle CCG002260.1 107 EVVGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 138 88*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-60	8	156	IPR003441	NAC domain
PROSITE profile	PS51005	57.46	10	156	IPR003441	NAC domain
Pfam	PF02365	9.4E-28	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MGLRDIGATL PPGFRFYPND EELVCHYLYK KITNEEVLKG TLVEIDLHTC EPWQLPEVAK 60 LNATEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRTV LDPTTREVVG MRKTLVFYKN 120 RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFHKSKAE DSTKFMFEST TDSGSTVNLT 180 ADHQTLARGY QQMISLSSTT PHQDQTSLLN LLQLSQDRNS KYPMDTDISS KAVDEYGFLW 240 DDMNLEENSL GDGVVASNLE DMRFEIDHNS MVFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-47	9	159	16	168	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-47	9	159	16	168	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-47	9	159	16	168	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-47	9	159	16	168	NO APICAL MERISTEM PROTEIN
3swm_A	3e-47	9	159	19	171	NAC domain-containing protein 19
3swm_B	3e-47	9	159	19	171	NAC domain-containing protein 19
3swm_C	3e-47	9	159	19	171	NAC domain-containing protein 19
3swm_D	3e-47	9	159	19	171	NAC domain-containing protein 19
3swp_A	3e-47	9	159	19	171	NAC domain-containing protein 19
3swp_B	3e-47	9	159	19	171	NAC domain-containing protein 19
3swp_C	3e-47	9	159	19	171	NAC domain-containing protein 19
3swp_D	3e-47	9	159	19	171	NAC domain-containing protein 19
4dul_A	3e-47	9	159	16	168	NAC domain-containing protein 19
4dul_B	3e-47	9	159	16	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028825.1	0.0	PREDICTED: NAC domain-containing protein 21/22-like
Swissprot	Q84TE6	2e-63	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A2K2BCZ7	0.0	A0A2K2BCZ7_POPTR; NAC family protein
STRING	cassava4.1_033050m	1e-154	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4381	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	3e-94	NAC domain containing protein 74

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]