PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG002224.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 184aa MW: 20721.4 Da PI: 4.802

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG002224.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.00019	33	55	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H CCG002224.1 33 YECVFCKRGFTTAQALGGHMNIH 55 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.6E-4	31	59	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.63E-6	31	59	No hit	No description
PROSITE profile	PS50157	10.99	33	60	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	35	55	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MESNQHDEES KSSSDEEEIT DRSDQDTGAG RSYECVFCKR GFTTAQALGG HMNIHRKDRA 60 KSRPSSVPSL SSKVDEDYAS FQGYPPIQSY PPHYPTPHEV HINYQTFFPA STTWGIGSPY 120 AQQHNGDFYV QSPHHLYPLG DDWRRSLSLQ IGPSHVDDNT KEKIEDGIGA DDELDLELRL 180 GHDP

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC208375	0.0	AC208375.1 Populus trichocarpa clone JGIACSB249-H15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028771.1	1e-136	PREDICTED: zinc finger protein JAGGED-like
TrEMBL	B9GS39	1e-132	B9GS39_POPTR; Uncharacterized protein
STRING	POPTR_0002s04250.1	1e-133	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1686	30	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	2e-13	C2H2 family protein