PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002223.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 196aa    MW: 22320.3 Da    PI: 8.4863
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002223.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.6e-053860123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ Fs+   L  H+++H
  CCG002223.1 38 YTCSFCKREFSSAQALGGHMNVH 60
                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-43563IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.25E-73564No hitNo description
PfamPF139121.3E-63861IPR007087Zinc finger, C2H2
SMARTSM003550.00363860IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4063865IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MDRNYIQKST TVEDKWEWNN VIFEGEHTSG ISWPKRNYTC SFCKREFSSA QALGGHMNVH  60
RRDRARLKQL PSWFCDCPKP HSMSNPKPLP YPSSKFSPYP DHTHDHSLLS PLLASFSSPS  120
YPEKKSIAEC PQSINSTRKI SDMRAVVGVG ELKKNFVQDG DQLKVSRTSG IISLDLGMRC  180
EDPKEVLDLE LRLGCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-113360229superman protein
2l1o_A2e-113360229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028770.11e-146PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A2K2BD641e-134A0A2K2BD64_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04260.11e-129(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.14e-29zinc finger protein 11