PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG002207.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 176aa MW: 19683.4 Da PI: 10.3797 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 6.8e-20 | 34 | 83 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrd ++ ++r +lg+f+taeeAa a+++a+++l+g CCG002207.1 34 HFRGVRKRP-WGRFAAEIRDpWK----KTRRWLGTFDTAEEAALAYDEAARSLRG 83 69*******.**********883....5999**********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.2E-30 | 33 | 91 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.562 | 34 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-33 | 34 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-21 | 34 | 91 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-12 | 34 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.08E-28 | 34 | 90 | No hit | No description |
PRINTS | PR00367 | 6.6E-10 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-10 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MAGDAWRRRN DTVTTTLSLA APSTPAAENE PQRHFRGVRK RPWGRFAAEI RDPWKKTRRW 60 LGTFDTAEEA ALAYDEAARS LRGPKARTNF FHRDHLAPLP FLQTTVVGAG GLKIWCSPVF 120 LSDGVSRVAA PTAVAPVRSE YQGYKIESVN ENVGLVLNEE KQRPLLFDLN LPAPLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-20 | 33 | 90 | 4 | 62 | ATERF1 |
3gcc_A | 7e-20 | 33 | 90 | 4 | 62 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028745.1 | 1e-127 | PREDICTED: ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A3N7ENU2 | 1e-113 | A0A3N7ENU2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s04430.1 | 1e-114 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 3e-22 | erf domain protein 9 |