PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG002090.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 320aa MW: 36297.6 Da PI: 6.7903

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG002090.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.2	2.2e-55	5	131	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL++kv++++++ +++ +vd++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++ g CCG002090.1 5 LPPGFRFHPTDEELITCYLTRKVSDTSFTS-KAMVDVDLNKCEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFR-AGV 100 79***********************999.88***********988999************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfykgrap+gek++Wvmheyrle CCG002090.1 101 LVGMKKTLVFYKGRAPRGEKSNWVMHEYRLE 131 ***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.42E-64	3	151	IPR003441	NAC domain
PROSITE profile	PS51005	59.801	5	151	IPR003441	NAC domain
Pfam	PF02365	1.3E-28	6	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MEENLPPGFR FHPTDEELIT CYLTRKVSDT SFTSKAMVDV DLNKCEPWDL PGKASMGEKE 60 WYFFSLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRAGV LVGMKKTLVF YKGRAPRGEK 120 SNWVMHEYRL EDKHPFKSTK EEWVVCRVFQ KSTEVKKPQQ EPSSQQSLGS PCDTNSIVND 180 KFGDIDLLNL NNIANSSSGF NNILAHSYND ESNVNMDSHM NWAAAREAAT LPSLAWPSGL 240 LSTNLTMNSL LLKALQLRSY QQREATTTNY SFLTNGIPHE FGADLGSNFQ ASSSKVLDPA 300 PQPQQQQQQE QPFSLDSINW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-56	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-56	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-56	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-56	4	157	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-56	4	157	19	174	NAC domain-containing protein 19
3swm_B	2e-56	4	157	19	174	NAC domain-containing protein 19
3swm_C	2e-56	4	157	19	174	NAC domain-containing protein 19
3swm_D	2e-56	4	157	19	174	NAC domain-containing protein 19
3swp_A	2e-56	4	157	19	174	NAC domain-containing protein 19
3swp_B	2e-56	4	157	19	174	NAC domain-containing protein 19
3swp_C	2e-56	4	157	19	174	NAC domain-containing protein 19
3swp_D	2e-56	4	157	19	174	NAC domain-containing protein 19
4dul_A	1e-56	4	157	16	171	NAC domain-containing protein 19
4dul_B	1e-56	4	157	16	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011045863.1	0.0	PREDICTED: NAC domain-containing protein 77
TrEMBL	A0A2K1Y9E5	0.0	A0A2K1Y9E5_POPTR; Uncharacterized protein
STRING	POPTR_0012s05280.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4946	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-107	NAC domain containing protein 58