PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002048.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 408aa    MW: 46782.1 Da    PI: 4.4952
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002048.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.47.2e-16171483128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykv...ePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                   GfrF+P d+elv +yL +k+++ + +++++v i++++i+     ePw++     k + ++++fF++  kk +   rk      g W++  kd +  +
  CCG002048.1  17 EGFRFRPDDQELVRFYLYPKITNPNlFTTFNVpIRDCHIFGNqarEPWQIWdFFPKRHGEDLFFFTQLTKKGRYVVRKIG-GGPGKWHQEYKDPPFDV 113
                  7*********************99986667778***9987543349****744555677899999999987654444333.35799******999887 PP

          NAM  95 k...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +   + +++ ++k++++ +   ++ ++ +W++ ey+l
  CCG002048.1 114 SidpNCKVTVIRKVFTYLN--PKSDHNGSWFLFEYSL 148
                  7777888899*******95..4455699*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-1811163IPR003441NAC domain
PROSITE profilePS5100521.21715163IPR003441NAC domain
PfamPF023654.3E-1217148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MAMPSQNPET QTLEILEGFR FRPDDQELVR FYLYPKITNP NLFTTFNVPI RDCHIFGNQA  60
REPWQIWDFF PKRHGEDLFF FTQLTKKGRY VVRKIGGGPG KWHQEYKDPP FDVSIDPNCK  120
VTVIRKVFTY LNPKSDHNGS WFLFEYSLPS LSEQIVLCQL RKKEVHNPET VNLQRSTTKK  180
RKRVADIESV DDATNYILQK PRIDVLDHQQ QHIMGFDGLV DIVSQEENQQ QHLQLEPLPD  240
NGLGFDYFES FSCENEQDFG IYLMATDSDS ISTSNAAPPS VSTFNPEENS RSIEFLSDEK  300
DADAASALDH DFCLQLLDLS GCYDEADGFP ATKATAQASA YWTQATPNLD EYFTSNAVDY  360
YLEHGVCDSS PTTWSGSFSH MLLEAPTCLI QEKEIHMDSN PSLVERNY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160182RKKEVHNPETVNLQRSTTKKRKR
2173181QRSTTKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999305.11e-174PREDICTED: NAC transcription factor 29-like
TrEMBLA0A2K1X3T40.0A0A2K1X3T4_POPTR; Uncharacterized protein
STRINGPOPTR_0017s08490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13633523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.12e-08NAC-domain protein 101