PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG002018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Trihelix | ||||||||
Protein Properties | Length: 502aa MW: 57297.1 Da PI: 5.3364 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 94.6 | 9.7e-30 | 42 | 125 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+kqe+laL+++r++m+ +++++ lk+plWeevskk+ e g++rs+k+Ckek+en+ k+++++keg+++r++++ t+++f+ql+ CCG002018.1 42 RWPKQETLALLKIRSDMDVAFKDSGLKAPLWEEVSKKLNELGYNRSAKKCKEKFENIYKYHRRTKEGRSGRSNGK--TYRFFEQLQ 125 8*********************************************************************96655..5******98 PP | |||||||
2 | trihelix | 102 | 4.5e-32 | 339 | 424 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+e+ aLi +r+++e +++++ k+plWee+s+ m++ g+ rs+k+Ckekwen+nk++k++ke++k+r +++s+tcpyf+ql+a CCG002018.1 339 RWPKEEIEALIGLRTKLEFQYEENGPKGPLWEEISASMKKLGYDRSAKRCKEKWENMNKYFKRVKESNKRR-PGDSKTCPYFQQLDA 424 8********************************************************************97.9************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.317 | 35 | 99 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.2E-4 | 39 | 101 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.14E-23 | 41 | 106 | No hit | No description |
Pfam | PF13837 | 7.2E-20 | 41 | 127 | No hit | No description |
SuperFamily | SSF46689 | 4.36E-5 | 335 | 408 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-4 | 336 | 398 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-5 | 337 | 396 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.642 | 338 | 396 | IPR017877 | Myb-like domain |
CDD | cd12203 | 7.19E-25 | 338 | 403 | No hit | No description |
Pfam | PF13837 | 3.6E-22 | 339 | 425 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 502 aa Download sequence Send to blast |
METSTTFPEN SNAATGNRDS EEGDEEMRVK AEEGDQHSTG NRWPKQETLA LLKIRSDMDV 60 AFKDSGLKAP LWEEVSKKLN ELGYNRSAKK CKEKFENIYK YHRRTKEGRS GRSNGKTYRF 120 FEQLQALDNT EALLPPPSSD KVHTSMAAAL VNPVSFIPNA VPCSIQSPGM NFVDTTSTST 180 ASASSEEAEG TRKKKRKLTD FFERLMKEVI DKQENLQNKF LEAIEKCEQE RIAREEAWKM 240 QEFDRIKREQ ELLVRERAIA DAKDAAVLAF LQKFSEQGIS VQLPDNPIVP MKFPDNQTVP 300 VPSSAPVQLP KNQAVPVENV VKTRENSSIE SFVNISPSRW PKEEIEALIG LRTKLEFQYE 360 ENGPKGPLWE EISASMKKLG YDRSAKRCKE KWENMNKYFK RVKESNKRRP GDSKTCPYFQ 420 QLDALYREKN RRVDGSGFDL KPEELLMHVM GGQGDQQQPE SATTEDRGSE NVDQNQENYR 480 DKEDGEGERI VANDPSSIEI ME |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 192 | 197 | KKKRKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011045710.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 1e-125 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | B9GGS3 | 0.0 | B9GGS3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s31660.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-117 | Trihelix family protein |