PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001881.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 492aa    MW: 55097.6 Da    PI: 5.746
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001881.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM141.74.4e-44992372128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                  ppG+rF+P d elv +yL kkv+g +l++ + i ++d+y+++P+dL  +  +++e+ewyfF++r++ky++g+r+nra+  gyWkatg dk ++ +   
  CCG001881.1  99 PPGYRFRPFDYELVLHYLDKKVKGLPLPM-NRIINADLYQFDPEDLAaQYSHHGENEWYFFTPRKRKYKNGTRPNRAAGGGYWKATGADKGITYQkpv 195
                  9****************************.668899**********9455666888************************************999899 PP

          NAM  96 .........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +++lvg +k Lv+y g+ pkg kt+W+mhe+rl
  CCG001881.1 196 ieagntityQKKLVGHRKALVYYAGKPPKGDKTNWIMHEFRL 237
                  9888888877778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.14E-5096264IPR003441NAC domain
PROSITE profilePS5100550.81698264IPR003441NAC domain
PfamPF023658.3E-2399237IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MSSSGEENCS QSPAMQFLEE PNPHEQPSVS TPSSSNIPSN PSPPQALMAS NSSPPPVPQP  60
PTMNPLFQAL STPTPRPRPP PPQRFSNYQD NDSYFSTFPP GYRFRPFDYE LVLHYLDKKV  120
KGLPLPMNRI INADLYQFDP EDLAAQYSHH GENEWYFFTP RKRKYKNGTR PNRAAGGGYW  180
KATGADKGIT YQKPVIEAGN TITYQKKLVG HRKALVYYAG KPPKGDKTNW IMHEFRLDAP  240
PLHVRNNRDD MRLDDCVLCR IYKKGKKSTP ASTNVRNRQR YEENPLLTID ADDEDYINDH  300
DCDPNHLSAI EASFAGEIYG MVTNSLENSF PILDELSQQQ TGTSIFPDAN KFFMFQDSQI  360
PGLEETFGTP APVDSINPED RSSEQMGLHD EFLNPIYSSP FNIPDHFFNL YSIMPTNLPM  420
NPSPLVNVCP MNTAPIRSLP PMNTAPSTGD LPPINTDPLT APFPPANPAN SQPTSEIMNA  480
APNHPGQPPQ HR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A9e-489726419168NAC domain-containing protein 19
3swm_B9e-489726419168NAC domain-containing protein 19
3swm_C9e-489726419168NAC domain-containing protein 19
3swm_D9e-489726419168NAC domain-containing protein 19
3swp_A9e-489726419168NAC domain-containing protein 19
3swp_B9e-489726419168NAC domain-containing protein 19
3swp_C9e-489726419168NAC domain-containing protein 19
3swp_D9e-489726419168NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045450.10.0PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A3N7EC690.0A0A3N7EC69_POPTR; Uncharacterized protein
STRINGPOPTR_0009s05690.11e-149(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101121642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.16e-56NAC domain containing protein 25