PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001838.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 344aa    MW: 37653.9 Da    PI: 8.8247
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001838.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00021111133223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +Cp Cg+ F   +nL+ H  + H
  CCG001838.1 111 SCPECGEIFMKAENLELHRAVrH 133
                  8*****************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280110133IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974110138IPR007087Zinc finger, C2H2
SuperFamilySSF563992.49E-20135343No hitNo description
Gene3DG3DSA:3.90.228.103.6E-15136342IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MKCSGSICSN SKVMHRPETA SIEVQRKRAS MGSAGKNVSS RSMKGPLNEI NGVVPSTNSS  60
LSASSNFSSS NVSSFRGMPF SRFSGCYECR MVVDPVLGIA RDHSLRGSIC SCPECGEIFM  120
KAENLELHRA VRHAVSELSS EDTSKNIVEI IFQSSWLKKQ APVCKIDRIL KVHNTQRTIS  180
KFEEYRDSIK AKATKLPKKQ PRCIADGNEL LRFHCTTFAC SLGLNGSSNL CNSVPNCNVC  240
SIIKNGFKES TTRDDNGRGI LTTATSGKAH DKATISEDGN GESERRAMLV CRVIAGRVKK  300
SMEGNAEDYD SVATGMEVYS NLDELYVSNP RAILPCFVVI YRGF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2757462e-84GU275746.1 Populus balsamifera isolate KUU07 haplotype A unknown gene, partial sequence.
GenBankGU2757472e-84GU275747.1 Populus balsamifera isolate KUU07 haplotype B unknown gene, partial sequence.
GenBankGU2757482e-84GU275748.1 Populus balsamifera isolate LOV02 haplotype A unknown gene, partial sequence.
GenBankGU2757492e-84GU275749.1 Populus balsamifera isolate LOV02 haplotype B unknown gene, partial sequence.
GenBankGU2757502e-84GU275750.1 Populus balsamifera isolate STO11 haplotype A unknown gene, partial sequence.
GenBankGU2757512e-84GU275751.1 Populus balsamifera isolate STO11 haplotype B unknown gene, partial sequence.
GenBankGU2757522e-84GU275752.1 Populus balsamifera isolate WHR03 haplotype A unknown gene, partial sequence.
GenBankGU2757532e-84GU275753.1 Populus balsamifera isolate WHR03 haplotype B unknown gene, partial sequence.
GenBankGU2757542e-84GU275754.1 Populus balsamifera isolate MGR10 haplotype A unknown gene, partial sequence.
GenBankGU2757552e-84GU275755.1 Populus balsamifera isolate MGR10 haplotype B unknown gene, partial sequence.
GenBankGU2757562e-84GU275756.1 Populus balsamifera isolate GAL12 haplotype A unknown gene, partial sequence.
GenBankGU2757572e-84GU275757.1 Populus balsamifera isolate GAL12 haplotype B unknown gene, partial sequence.
GenBankGU2757582e-84GU275758.1 Populus balsamifera isolate HAY07 haplotype A unknown gene, partial sequence.
GenBankGU2757592e-84GU275759.1 Populus balsamifera isolate HAY07 haplotype B unknown gene, partial sequence.
GenBankGU2757602e-84GU275760.1 Populus balsamifera isolate INU03 haplotype A unknown gene, partial sequence.
GenBankGU2757612e-84GU275761.1 Populus balsamifera isolate INU03 haplotype B unknown gene, partial sequence.
GenBankGU2757622e-84GU275762.1 Populus balsamifera isolate NWL07 haplotype A unknown gene, partial sequence.
GenBankGU2757632e-84GU275763.1 Populus balsamifera isolate NWL07 haplotype B unknown gene, partial sequence.
GenBankGU2757642e-84GU275764.1 Populus balsamifera isolate FBK13 haplotype A unknown gene, partial sequence.
GenBankGU2757652e-84GU275765.1 Populus balsamifera isolate FBK13 haplotype B unknown gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012508.10.0PREDICTED: uncharacterized protein LOC105116747
TrEMBLA0A2K2AI220.0A0A2K2AI22_POPTR; Uncharacterized protein
STRINGPOPTR_0005s16070.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84732128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-100C2H2-like zinc finger protein