PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001791.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 326aa    MW: 36218.2 Da    PI: 6.0596
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001791.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-084491354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                   +  rE+ RR+r+N+ f eL   l ++     +K++Ka+iL  +++ +k+L
  CCG001791.1 44 IQKADREKLRRERLNEHFVELGNTLDPD----RPKNDKATILADTIQLLKDL 91
                 56789********************997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.8624191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-1341110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-1142112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.59E-64295No hitNo description
PfamPF000102.1E-64491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-74797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDPFTDFNPP PPPPDPRHVP PTRPNPNPKS SEAEIKDSVS ARKIQKADRE KLRRERLNEH  60
FVELGNTLDP DRPKNDKATI LADTIQLLKD LTSQVDKLKA EYATLSEESL ELSQEKNDLR  120
EEKASLKSDI ENLNIQCQQR LRAPYPWPAM DHSYIMAPPS YPFPMPVPMP PGAIPLHSSI  180
QPYPFFGNQN PAVIHNPCST FVPRMAPNTL VDQQPAQHVS SLSQPASRSH VSGEQDLKNK  240
SSGECKIEKS EGSNDVTTDL ELKTPGSSAD QDLSSGQRKS QKSQRKESSV TERSSSSRCS  300
SSHSVQDSSP NSVVDSTKHD DLDKLE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2309101e-102CU230910.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011037263.10.0PREDICTED: transcription factor bHLH121-like
RefseqXP_011037264.10.0PREDICTED: transcription factor bHLH121-like
RefseqXP_011037265.10.0PREDICTED: transcription factor bHLH121-like
RefseqXP_011037266.10.0PREDICTED: transcription factor bHLH121-like
SwissprotQ9LT231e-90BH121_ARATH; Transcription factor bHLH121
TrEMBLB9H1510.0B9H151_POPTR; Uncharacterized protein
STRINGPOPTR_0004s17540.30.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.13e-81bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]