PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001726.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 678aa    MW: 74099.8 Da    PI: 6.4424
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001726.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.32.9e-094194561954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  CCG001726.1 419 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 456
                  664459******************************88 PP
2BELL129.51.1e-41281352172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  erqelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ g+g+akpYt+lAl++iSrhFrcL+dai++qi
  CCG001726.1 281 ERQELQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVISGCGAAKPYTALALQTISRHFRCLRDAITGQI 352
                  79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-68205350IPR006563POX domain
PfamPF075261.6E-52211349IPR006563POX domain
PROSITE profilePS5007112.163397460IPR001356Homeobox domain
SMARTSM003891.0E-9400464IPR001356Homeobox domain
CDDcd000864.44E-13400461No hitNo description
SuperFamilySSF466892.61E-17401467IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-29403466IPR009057Homeodomain-like
PfamPF059204.6E-18417456IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MHMATYYTSS NNQRDGAAMV YLPGSYPEAP VLPGNMMMYM NSGSYSDNLA GNSHQQNNCI  60
EFQSVENSDS TPQQQEILSS LGGSRLGEHG FGTWRDGRNE MLVMHSVSGA SSVLHGAQSL  120
QGQGLSLSLG TQIQSGIQMP SISYRNTNPG LTSFLSPNSS ITGDGGGRNG SSRDDQSRNI  180
EYLTPGFSGG NHDVNKGDLS PYGMNNIART IPNSKYLKAA QQLLDEVVNV RKAIKQPDKE  240
KNQTTSEHGL NSAKDGDSGS KNGASNLQES TNSPSELSHA ERQELQNKLT KLLSMLDEVD  300
RRYKQYYHQM QIVVSSFDVI SGCGAAKPYT ALALQTISRH FRCLRDAITG QIHATRKSLG  360
EQETSENSKG VGITRLRYVD QHLRQQRALH QLGMMQQHAW RPQRGLPESS VSILRAWLFE  420
HFLHPYPKDS DKIMLARQTG LTRSQVSNWF INARVRLWKP MVEEMYKEEL GDAEMDSNSS  480
SENAAKGTKG DAGTSEDRGE EFQQSASSIA TERCSAGQLM DPKSDHVPDM EMAGSTTRSN  540
FQNGTRGEAF TEYGLLKLRE DQRASMDDCG LFSDAMAHSE GGGDRFMAAA AAAYQMSEVG  600
RFGNGSGVSL TLGLQHCEGG NLPMSGTTHH GFVSMRGDDD IYNAASSVGA GATDFECLNP  660
GNRQHRFSSS HVFHDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-17406463158Homeobox protein Meis1
4xrs_B4e-17406463158Homeobox protein Meis1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0288610.0CT028861.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011037163.10.0PREDICTED: BEL1-like homeodomain protein 6
TrEMBLA0A2K2AVE80.0A0A2K2AVE8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s16660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-141BEL1-like homeodomain 6