PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG001631.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

CPP

Protein Properties

Length: 772aa MW: 84675 Da PI: 6.2456

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG001631.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	46.1	9.9e-15	484	523	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+CnCk+skClk+YCeCfaag +C e C+C +C+N+ CCG001631.2 484 SCKRCNCKRSKCLKLYCECFAAGLYCIEPCSCLECSNNPA 523 689**********************************975 PP
2	TCR	48	2.5e-15	569	607	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeCf+ g+ Cs+ C+Ce+CkN+ CCG001631.2 569 RHKRGCNCKKSSCLKKYCECFQGGVGCSSYCRCEGCKNT 607 589***********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	4.6E-16	483	524	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	36.598	484	609	IPR005172	CRC domain
Pfam	PF03638	5.4E-11	486	521	IPR005172	CRC domain
SMART	SM01114	1.2E-14	569	610	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	4.8E-12	571	607	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 772 aa Download sequence Send to blast
MDLNTPNKNQ IPATNPFSQF EDSPVFNYIN NLSPIELVKS MHNGQAFNFP SFASPLSVFA 60 SPQLSSQSDA RSFMRRDQFP EPSKPELLQS KEENDTSIGV FEAAQLTGLS VEHSECSTPA 120 NSSKGVITKL PGEHMELAIE EPDTLKYYCA SPDDNIIMVP LKAIIEPQMA GDPNDRYCLR 180 KSEKDLCKIG RTGQNEDEAG CDWVALISDV ADILTLEPSI DEESAEKQKM VDPGTISFIS 240 NVLQAPQDNS EDSETSYYAG SSQQREIGEP GIQPVESGEQ NEADQTPSVF SGTLPDKPIV 300 NDAAAKVDIR GKSYQSSSKQ QHKIRRRCLL FEMGAHKKKL AFESSSSTSS QSDHMGASIE 360 KHATPRTDKG KTLSALPGRG IGLHLNALTA TSSGNAVKIE TLASGKQEIS QPPSPPAHMA 420 SGLDPVSKSL ALITVETDSV PFDNEDKVME NVPQTSMVVT EEFGISSPKM KRQKFEYLGA 480 SSSSCKRCNC KRSKCLKLYC ECFAAGLYCI EPCSCLECSN NPAHEDTVLE TRRQIESRNP 540 LAFAPKVIRN SDSVSEFGEE TNKTPASARH KRGCNCKKSS CLKKYCECFQ GGVGCSSYCR 600 CEGCKNTFGC KNGVEENDLK WGESKIHENI SNLNFLDIIE KGEDHPDLLV PSKDSRSPVH 660 PQIPTSGQLS GSSLCDVGPS TKMRPIQRFR TNFFYHQPKY EKHLQVIPED ETPEILNRNC 720 LPTSGVKSVS PNSKRVSPPH HGSGPSTTWR RGRKLILRSV SPSPSLNPPC EQ

Sequence ? help Back to Top

Protein Sequence Length: 772 aa Download sequence Send to blast

MDLNTPNKNQ IPATNPFSQF EDSPVFNYIN NLSPIELVKS MHNGQAFNFP SFASPLSVFA  60
SPQLSSQSDA RSFMRRDQFP EPSKPELLQS KEENDTSIGV FEAAQLTGLS VEHSECSTPA  120
NSSKGVITKL PGEHMELAIE EPDTLKYYCA SPDDNIIMVP LKAIIEPQMA GDPNDRYCLR  180
KSEKDLCKIG RTGQNEDEAG CDWVALISDV ADILTLEPSI DEESAEKQKM VDPGTISFIS  240
NVLQAPQDNS EDSETSYYAG SSQQREIGEP GIQPVESGEQ NEADQTPSVF SGTLPDKPIV  300
NDAAAKVDIR GKSYQSSSKQ QHKIRRRCLL FEMGAHKKKL AFESSSSTSS QSDHMGASIE  360
KHATPRTDKG KTLSALPGRG IGLHLNALTA TSSGNAVKIE TLASGKQEIS QPPSPPAHMA  420
SGLDPVSKSL ALITVETDSV PFDNEDKVME NVPQTSMVVT EEFGISSPKM KRQKFEYLGA  480
SSSSCKRCNC KRSKCLKLYC ECFAAGLYCI EPCSCLECSN NPAHEDTVLE TRRQIESRNP  540
LAFAPKVIRN SDSVSEFGEE TNKTPASARH KRGCNCKKSS CLKKYCECFQ GGVGCSSYCR  600
CEGCKNTFGC KNGVEENDLK WGESKIHENI SNLNFLDIIE KGEDHPDLLV PSKDSRSPVH  660
PQIPTSGQLS GSSLCDVGPS TKMRPIQRFR TNFFYHQPKY EKHLQVIPED ETPEILNRNC  720
LPTSGVKSVS PNSKRVSPPH HGSGPSTTWR RGRKLILRSV SPSPSLNPPC EQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-17	488	606	14	120	Protein lin-54 homolog
5fd3_B	1e-17	488	606	14	120	Protein lin-54 homolog
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011032435.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBL	A0A2K2ABV5	0.0	A0A2K2ABV5_POPTR; Uncharacterized protein
STRING	POPTR_0005s05270.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2619	33	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-89	TESMIN/TSO1-like CXC 2