PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001610.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 801aa    MW: 87031.1 Da    PI: 6.2502
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001610.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.5e-08180224554
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h+++Er RR ri ++   L+el+P++      K + a++L + v+Y+k L
  CCG001610.2 180 HSIAERLRRVRITERVKALQELVPTC-----NKTDRAAMLDEIVDYVKFL 224
                  99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.30E-9173229No hitNo description
SuperFamilySSF474595.23E-14173235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.783175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-14177236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-6180224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-10181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.25.40.103.6E-7316345IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.122318348IPR002885Pentatricopeptide repeat
PfamPF015350.006321346IPR002885Pentatricopeptide repeat
PfamPF130413.4E-8348388IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.279349383IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.1E-5351385IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.6E-7379398IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.645384418IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.073421451IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.931452486IPR002885Pentatricopeptide repeat
PfamPF015350.0033454483IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.0E-4454485IPR002885Pentatricopeptide repeat
PfamPF015350.0047485514IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.39487517IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.941518552IPR002885Pentatricopeptide repeat
SuperFamilySSF484524.85E-5523741IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137510.041553587IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.6E-7556626IPR011990Tetratricopeptide-like helical domain
TIGRFAMsTIGR007564.7E-4559584IPR002885Pentatricopeptide repeat
PfamPF130416.1E-9583630IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.755588614IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.983618652IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.1E-4620653IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.089653687IPR002885Pentatricopeptide repeat
PfamPF015350.025656681IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.6E-7661736IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.399719753IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MAGNPPPEGL GDDFFEQILA GQPPGYGGEA VGSTSLPMMG LQLGSSAANV GLMRSSANNN  60
MGMMPLGLNL EHHGFLRQQQ DDGSSSLDTN NSNNINNASP FSITSAGFLG RDSVHMTSLF  120
PTFGQLQIHS SIRSTPPPLG PPQIHQFNSQ PPSGAVSAVP QPPGIRPRVR ARRGQATDPH  180
SIAERLRRVR ITERVKALQE LVPTCNKTDR AAMLDEIVDY VKFLRLQVKV LSMSRLGAAG  240
AVAQLVADVP LSSVQGEGIE GGANQQAWEN WSNDGTEQEV AKLMEEDVGA AMQLLQSKAL  300
CIMPISLASA IFRARPPNAP TLNTLIKVYL DNGLVRLAHQ VFEKMPSPDI VSFNVMIVGY  360
AKKGFGLEAM RLFHEIVGLG LEPDEFTILG LLVSCGQLGN VKFGKAVHGW MERRKPTISS  420
NLILGNALLD MYVKCQKVGL ALRTFGALKD KDIVSWNMIV AGCAKVGELE QARLFFYQMP  480
CRDIVSWNSL VTGYAYRGDF AMVKELIIDM VMENVIPDTV TMISLVSAAT ESGALDQGRW  540
AHGWVIRMKI KLDAFLGSAL IDMYCKCGSI ERALRVFKEI NKKDVTVWTA MITGLAFHGY  600
GSKALELFSE MQEDVSPDDV TFVSVLSACS HSGLVDQGIK VFSSMTDYGI EPGVEHYGCL  660
VDLLARSGRL SEARDIIDQM PMKPSRSIWG AMLNACQAQG DVELAELASR ELLNLDPEEE  720
GGYTLLSNIY AASGRWSYSK KIRETMESRG VKKTAGCSSV VVDGVVHNFI SADRCHPGWV  780
DISSILNCLK NEMKPGADLG L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D1e-6431874614334PLS9-PPR
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2375870.0AC237587.1 Populus trichocarpa clone POP036-C05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032403.10.0PREDICTED: pentatricopeptide repeat-containing protein At3g04750, mitochondrial
SwissprotQ9SR010.0PP212_ARATH; Pentatricopeptide repeat-containing protein At3g04750, mitochondrial
TrEMBLA0A2K2AC000.0A0A2K2AC00_POPTR; Uncharacterized protein
STRINGPOPTR_0005s05510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1441722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.33e-65bHLH family protein
Publications ? help Back to Top
  1. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]
  2. Liu JM, et al.
    The E-Subgroup Pentatricopeptide Repeat Protein Family in Arabidopsis thaliana and Confirmation of the Responsiveness PPR96 to Abiotic Stresses.
    Front Plant Sci, 2016. 7: p. 1825
    [PMID:27994613]