PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001572.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 400aa    MW: 44369.9 Da    PI: 4.5278
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001572.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.89.2e-4971351129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  lppGfrFhPtd elv++yLk+kv gkkl++ ++i+ev+iyk+ PwdLp k ++++++ +wyfF++++kkya+g r +r+t+ gyWk+tgkd+++   k
  CCG001572.1   7 LPPGFRFHPTDVELVKYYLKRKVLGKKLHF-QAIAEVEIYKYAPWDLPgKsCLRTGDLKWYFFCPTEKKYASGVRMKRSTDIGYWKTTGKDRSIQY-K 102
                  79**************************99.89***************6347788899*************************************9.8 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                  +e+vg+ ktLvf++grapkg +tdWvm eyrle
  CCG001572.1 103 NEVVGMIKTLVFHTGRAPKGDRTDWVMYEYRLE 135
                  999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-565157IPR003441NAC domain
PROSITE profilePS5100553.1937157IPR003441NAC domain
PfamPF023652.4E-258134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MGKKSSLPPG FRFHPTDVEL VKYYLKRKVL GKKLHFQAIA EVEIYKYAPW DLPGKSCLRT  60
GDLKWYFFCP TEKKYASGVR MKRSTDIGYW KTTGKDRSIQ YKNEVVGMIK TLVFHTGRAP  120
KGDRTDWVMY EYRLEEIELA DKGIAQDGYV LCVIFKKGPG PKNGAQYGEP FKEEEWDDDD  180
DDDEVEEVNF HKAILPAAMH TAFMLPKNAN MSIAMSSYVP ESTCTGLPVS CPSQTPACTT  240
LPMVSSNDVA STEDHQVVHE YVNGGEADSS AGISATAYQQ PSNPKGSILA SSSSYVPEIM  300
CYPAYIPSMD ASQVEAPQIM DNSGDLLSPL AILDNDNTEN VYFGGIAEPE TDIYQNLGDI  360
ASSGSGDYIS NSQYLMDPTR LDSNVGFLEL MDLDTPLYHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-44615716165NO APICAL MERISTEM PROTEIN
1ut4_B2e-44615716165NO APICAL MERISTEM PROTEIN
1ut7_A2e-44615716165NO APICAL MERISTEM PROTEIN
1ut7_B2e-44615716165NO APICAL MERISTEM PROTEIN
4dul_A2e-44615716165NAC domain-containing protein 19
4dul_B2e-44615716165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032332.10.0PREDICTED: NAC transcription factor 29-like
SwissprotQ9FY821e-85NAC82_ARATH; NAC domain-containing protein 82
TrEMBLB9MZ910.0B9MZ91_POPTR; Uncharacterized protein
STRINGPOPTR_0005s06040.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.16e-84NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]