PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001517.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 559aa    MW: 60733.4 Da    PI: 6.448
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001517.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.1e-10278323655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri  ++ +L++l+P+     +k  s a++L  Av++Ik Lq
  CCG001517.1 278 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDFAVQHIKGLQ 323
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.618272322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-12275329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.65E-10276327No hitNo description
Gene3DG3DSA:4.10.280.105.6E-11277329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-7278323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11278328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.40.50.3003.7E-69346533IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5141934.346350559No hitNo description
CDDcd018687.51E-110352516No hitNo description
SuperFamilySSF525406.04E-57352526IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM001731.9E-30352518No hitNo description
TIGRFAMsTIGR002319.8E-37353511IPR005225Small GTP-binding protein domain
SMARTSM001755.1E-105355518No hitNo description
PRINTSPR004492.0E-39355376No hitNo description
PfamPF000712.2E-60356516IPR001806Small GTPase superfamily
SMARTSM001741.5E-12357518No hitNo description
SMARTSM001762.8E-5360557No hitNo description
PRINTSPR004492.0E-39378394No hitNo description
PRINTSPR004492.0E-39396418No hitNo description
PRINTSPR004492.0E-39458471No hitNo description
PRINTSPR004492.0E-39493515No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0005829Cellular Componentcytosol
GO:0005525Molecular FunctionGTP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MYQQPSTSSK SPQKPAVPSG LTRYGSAPGS FLTRAVDSVI GVDRELSGLG STSLVGSRQY  60
FSGDSPSVTS ESTCKVNSSS CDPKAPKSGG SSGSLQRSYG FNELPHGAGS LVRQRSSPAG  120
FLSHLATENG GFSITRESGG YNAHSGPGGG HSVSRLKPQL SFTRQESLSQ ISEVSENVVE  180
GIGSDNNHQN CTHSYSAAGF GMESWDNPNS IVFSGPPSKQ ARNGDGDIYS CFNGLETQFS  240
LPQTSLEIET VEKLLHVPED SVPCKIRAKR GFATHPRSIA ERERRTRISG KLKKLQDLVP  300
NMDKQTSYAD MLDFAVQHIK GLQNEVEPQP SPASRELSET ASMSSDEEGG EEYLFKIVII  360
GDSAVGKSNL LSRYARNEFN LHSKATIGVE FQTQSMEIDG KEVKAQIWDT AGQERFRAVT  420
SAYYRGAVGA LIVYDISRRT TFDSVGRWLD ELKTHSDTTV AMMLVGNKCD LENIRDVSVE  480
EGKSLAEAEG LFFMETSALD STNVKKAFEI VIREIYNNVS RKVLNSDTYK AELSLNRVTL  540
VNNGSDSKQA QGYFSCCSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fbl_B8e-7735252214184Ras-related protein Rab-11A
5fbq_B8e-7735252214184Ras-related protein Rab-11A
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1486870.0EF148687.1 Populus trichocarpa x Populus deltoides clone WS0136_G09 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042788.10.0PREDICTED: transcription factor bHLH128-like
TrEMBLA0A2K2BN680.0A0A2K2BN68_POPTR; BHLH family protein
STRINGcassava4.1_010829m1e-162(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-79bHLH family protein