PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG001452.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 718aa MW: 78159.7 Da PI: 6.666

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG001452.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	120.1	2e-37	102	226	3	126
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgk.dkevlskkge 98 G+rF P+d+elvveyL kk+++++l+ + i+ev+iy+++P++L +k+k +e+ wyfF++r +ky++g+r+ r + g+Wk tg+ d+++l+++++ CCG001452.1 102 TGIRFFPHDQELVVEYLMKKIRNEPLPK-NRIHEVNIYEYHPKTLAEKYKLyREDAWYFFTTRTRKYPNGNRPDRGVPGGFWKPTGSpDTKILDENSN 198 7**********************999.77**********86554436779***************99*****988999 PP NAM 99 lvglkktLvfykgrapkgektdWvmhey 126 ++ +++L fy+g+ + g++tdW mhey CCG001452.1 199 TIVERRSLDFYEGKGKGGSRTDWKMHEY 226 ************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-42	100	254	IPR003441	NAC domain
PROSITE profile	PS51005	42.804	100	254	IPR003441	NAC domain
Pfam	PF02365	1.6E-16	102	226	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 718 aa Download sequence Send to blast
MQQNNGQSSM SNYNNSKKMK AGASDRDSDD NDTQFGTNIL SNASADMFPD QFSTPPNNAM 60 ITACSPTNLV NRLDQPQPQG SSSRVNVDDG NYIDPYFRAF ATGIRFFPHD QELVVEYLMK 120 KIRNEPLPKN RIHEVNIYEY HPKTLAEKYK LYREDAWYFF TTRTRKYPNG NRPDRGVPGG 180 FWKPTGSPDT KILDENSNTI VERRSLDFYE GKGKGGSRTD WKMHEYYPTT NNVSSSSSEG 240 MRLNDCILCR IYLKGEKQKA EAKKTGKKSR NYGNTVSHGP ADSRNDASTS YNDNSQQPAN 300 HAAFTSDTME VYFNGIQPYD SNMNQCCYGD NSNQTAAMME PAMYTLPNSI EGTGRVSSQR 360 VAFTVPSSSM PLTMNVAGLN GPSSSMPLTM HGAGFMRGPN SLHGAGFMRG PNSLMPLTMH 420 GAELNEPNST MHLAGLNGPN FSMPLTMHGA GLNGSSMPLP MHDARLKGPS SSMPLTMHGA 480 GLNGSSMPLP MHDARLKGPS SSMPLTMHGA GLNVPNSSMM HGAGLNASSM PLITMHGAEL 540 NGFSMPLITM HGAELNGFSM PLITMHGAEL NGFSMPLITM HGAELNGFSM PLITMHGAEL 600 NGSSMPLTMH GAGLKEPNSS MPLTMHGAGL NGPSSSMPLT MHGAGLNGSI SSMPPTTLPM 660 DNMEGNDHLV EPNNDIQFNN HQELNDDLRN SLPDSAFMDD AMARIHEMWA SSNTRREG

Sequence ? help Back to Top

Protein Sequence Length: 718 aa Download sequence Send to blast

MQQNNGQSSM SNYNNSKKMK AGASDRDSDD NDTQFGTNIL SNASADMFPD QFSTPPNNAM  60
ITACSPTNLV NRLDQPQPQG SSSRVNVDDG NYIDPYFRAF ATGIRFFPHD QELVVEYLMK  120
KIRNEPLPKN RIHEVNIYEY HPKTLAEKYK LYREDAWYFF TTRTRKYPNG NRPDRGVPGG  180
FWKPTGSPDT KILDENSNTI VERRSLDFYE GKGKGGSRTD WKMHEYYPTT NNVSSSSSEG  240
MRLNDCILCR IYLKGEKQKA EAKKTGKKSR NYGNTVSHGP ADSRNDASTS YNDNSQQPAN  300
HAAFTSDTME VYFNGIQPYD SNMNQCCYGD NSNQTAAMME PAMYTLPNSI EGTGRVSSQR  360
VAFTVPSSSM PLTMNVAGLN GPSSSMPLTM HGAGFMRGPN SLHGAGFMRG PNSLMPLTMH  420
GAELNEPNST MHLAGLNGPN FSMPLTMHGA GLNGSSMPLP MHDARLKGPS SSMPLTMHGA  480
GLNGSSMPLP MHDARLKGPS SSMPLTMHGA GLNVPNSSMM HGAGLNASSM PLITMHGAEL  540
NGFSMPLITM HGAELNGFSM PLITMHGAEL NGFSMPLITM HGAELNGFSM PLITMHGAEL  600
NGSSMPLTMH GAGLKEPNSS MPLTMHGAGL NGPSSSMPLT MHGAGLNGSI SSMPPTTLPM  660
DNMEGNDHLV EPNNDIQFNN HQELNDDLRN SLPDSAFMDD AMARIHEMWA SSNTRREG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-31	103	264	23	174	NAC domain-containing protein 19
3swm_B	1e-31	103	264	23	174	NAC domain-containing protein 19
3swm_C	1e-31	103	264	23	174	NAC domain-containing protein 19
3swm_D	1e-31	103	264	23	174	NAC domain-containing protein 19
3swp_A	1e-31	103	264	23	174	NAC domain-containing protein 19
3swp_B	1e-31	103	264	23	174	NAC domain-containing protein 19
3swp_C	1e-31	103	264	23	174	NAC domain-containing protein 19
3swp_D	1e-31	103	264	23	174	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011033356.1	0.0	PREDICTED: uncharacterized protein LOC105131874
TrEMBL	B9II77	0.0	B9II77_POPTR; Uncharacterized protein
STRING	POPTR_0016s05580.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF23076	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	1e-36	NAC domain containing protein 25