PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001404.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 1080aa    MW: 121860 Da    PI: 8.1687
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001404.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.23.2e-27180233255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  +r+ Wt++LHe+Fv++v++LGG+ +A Pk+il++m+ kgLt+ +vkSHLQkYR+
  CCG001404.1 180 KRITWTQDLHEKFVNCVNSLGGAVEAKPKAILKMMETKGLTIVQVKSHLQKYRS 233
                  79***************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.016176236IPR017930Myb domain
SuperFamilySSF466894.12E-14177233IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-24178233IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-20180234IPR006447Myb domain, plants
PfamPF002493.6E-8183232IPR001005SANT/Myb domain
PROSITE profilePS501029.439252364IPR000504RNA recognition motif domain
SMARTSM003608.5E-4258337IPR000504RNA recognition motif domain
PfamPF000767.4E-7282323IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3302.1E-10282339IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549285.29E-11282341IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3301.1E-21348435IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549286.79E-23353435IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010217.302355432IPR000504RNA recognition motif domain
SMARTSM003603.3E-23356428IPR000504RNA recognition motif domain
PfamPF000762.8E-15357425IPR000504RNA recognition motif domain
SMARTSM00733140682712IPR003690Transcription termination factor, mitochondrial/chloroplastic
SMARTSM007331500717748IPR003690Transcription termination factor, mitochondrial/chloroplastic
PfamPF025365.5E-10771900IPR003690Transcription termination factor, mitochondrial/chloroplastic
SMARTSM00733530821852IPR003690Transcription termination factor, mitochondrial/chloroplastic
PfamPF025361.2E-149531055IPR003690Transcription termination factor, mitochondrial/chloroplastic
SMARTSM007330.00159731004IPR003690Transcription termination factor, mitochondrial/chloroplastic
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0009536Cellular Componentplastid
GO:0000166Molecular Functionnucleotide binding
GO:0003690Molecular Functiondouble-stranded DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1080 aa     Download sequence    Send to blast
MGEVSQRQDL ETATSTNIIP SQFDELAPAF CTSECLVDLQ QDDDYEIATF PSSSQVPGPN  60
DAKMSSYQSS RGNIFDESSW QTVLRPYLFS NQHHKYCEKT QKHLPSINLW ESTSLSLERV  120
QLLGDNATLI GRPLQPAPDR QNDPELLKSQ QLESSTRHLG DGSSTSSGSG SSGPIFSSRK  180
RITWTQDLHE KFVNCVNSLG GAVEAKPKAI LKMMETKGLT IVQVKSHLQK YRSDKYLSEW  240
KQEKPTINDM PQLVFSSRIS MGIQEALQLQ LDIEKHLHEQ LEAFQMHGEI EEGAVIYDKV  300
TGKSRGYGFI TYKHMESAQS ALGAPSRLID SRMAVCNLAC EGLTGASTTP DLAQRKLYIG  360
GLSPEISSEM LLNFFGRYGD IEEGSVAYDK DTNESRGFGF VTYKTVEASK KAIDDPHKLF  420
GGRTIIVKLA DTHRSKTVQT HLPAPMVPLQ VPMGAGGYAQ PGKAPAGSGT PVGYPYPQTV  480
APYPASSYPN PPVAPAPYPT QSQISYVQVP SKKEPLGHSP APPVGMGGYP PYYYPKQFYG  540
TKTTVQNENL DRNLIGNDQS ISKISDAARR EAQASTALLE YLHSTRSFQF LDAEHMSKYS  600
PVFVKNLLKK VNIDADIRRS ITRYLRYHPI NEFEIFFESM GLKPQEYSSL LPRDLMYLSD  660
DDLLLENYHV MCNYGIARNK MGKIYKEATE VFRYDYGVLA LKLKAYEKLG LSSSFIAKVV  720
VRSPDLLIGD ANIDFIKILE LLRKGGLEYR RIEKLLSDKS TYNWSQLLSL LNLFGKAGYN  780
DEQLSELITQ KPWILREDSV DRALLLIGLL LKFGSTMNQI CSLFLQFPKV QVEKFASNLR  840
HCFLFLNEIN MEAYEIGKLF RSRPIFIGSF TLKKTNSLLS RLNAGKKRIC EVIQENPEIM  900
KKWVKGSKIE WLPDSGEELR SQMLKTKFFL DLGFVENSDE MKRALKVFRG RGAELQERFD  960
CLVIAGLDRK DVCEMIKVSP QILNQKKEVI ETKIDFLIND LGFPVSSLVR FPSYLSYTMQ  1020
RAKLRLTMYT WLKEQGKVNP MLSFSTIVGC TDNVFLSQYV DRHPRGPEIW EDLKKEICSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-16179236259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-16179236259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-16179236158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-16179236158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-16179236158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-16179236158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-16179236259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-16179236259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-16179236259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-16179236259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-16179236259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-16179236259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033239.10.0PREDICTED: uncharacterized protein LOC105131789 isoform X1
RefseqXP_011033240.10.0PREDICTED: uncharacterized protein LOC105131789 isoform X1
RefseqXP_011033241.10.0PREDICTED: uncharacterized protein LOC105131789 isoform X1
TrEMBLA0A067EGX60.0A0A067EGX6_CITSI; Uncharacterized protein
STRINGPOPTR_0016s04850.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.26e-32G2-like family protein