PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG001354.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Trihelix | ||||||||
Protein Properties | Length: 466aa MW: 53569.5 Da PI: 6.5969 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 77.3 | 2.3e-24 | 94 | 193 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt+++v++Li a+ +++++++++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ ++d CCG001354.1 94 KWTDHMVRLLIMAVFYIGDDVGSEGsdpigkkkpgglaQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQNLLDT 191 7*******************997533666777888888**********************************************559*****999999 PP trihelix 85 le 86 ++ CCG001354.1 192 MD 193 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.8E-21 | 92 | 218 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:1900037 | Biological Process | regulation of cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MGSGMLGLEL PLHQPENPQN PNHMNHPQVV AYTHHESDHR QHSQQSVKQA YPYASSTKPK 60 QLLSPLSDED EPSFTGDDST TEGKRKMSPW QRMKWTDHMV RLLIMAVFYI GDDVGSEGSD 120 PIGKKKPGGL AQKKGKWKSV SRAMMEKGFY VSPQQCEDKF NDLNKRYKRV NDILGKGTAC 180 RVVENQNLLD TMDLSPKMKE EVRKLLNSKH LFFREMCAYH NSCGHAPSWV AFGSNHSPEM 240 ATGPSHAHAQ QHQRCSHSTE NAQVVTNSRT ETEGSKMAKR AINEEDEVDD DDDDDSDNDE 300 DDYEDDGDEA IEGNSRHQSG HGQGDEDNRD EKSSRKRPRK DVFSATSSLM QQLNGEIMNV 360 LQDVAKSSWE KKHWMRLRLM QLEEQQVSYQ CQAYDLEKQR LKWVKFSSKK EREMERAKLE 420 NERRRLENER MVLIVRKKEL ELLDTQHQQQ QQLPSNKRSD TSSIAG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011012418.1 | 0.0 | PREDICTED: uncharacterized protein LOC105116670 | ||||
TrEMBL | A0A2K1XDC9 | 0.0 | A0A2K1XDC9_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_006702m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4820 | 34 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10040.1 | 2e-79 | sequence-specific DNA binding transcription factors |