PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Binding Motif |

Orthologous Group |

Basic Information? help Back to Top

TF ID

CCG001330.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 397aa MW: 44303.3 Da PI: 8.2378

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG001330.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.9	3.2e-56	78	205	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeel+++yL++k+++ ++++ ++i +vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ ++ CCG001330.1 78 LPPGFRFHPTDEELITYYLQNKISDADFSC-RAIGDVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSvTS 174 79**************************.89***********99999************************************99899 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +lvg+kktLvfy+grap+gekt+Wvmheyr+ CCG001330.1 175 QLVGMKKTLVFYRGRAPRGEKTNWVMHEYRV 205 99*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-64	75	226	IPR003441	NAC domain
PROSITE profile	PS51005	60.611	78	226	IPR003441	NAC domain
Pfam	PF02365	3.8E-29	79	205	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MNEVHKLGGA ACVLVFLTLS TSYCSLPLEP RPEQSWLADV EETYWLLGIW IQNPISDKGK 60 KQIGKEKDME GDAKEETLPP GFRFHPTDEE LITYYLQNKI SDADFSCRAI GDVDLNKCEP 120 WDLPGKAKMG EKEWYFFSLR DRKYPTGVRT NRATNTGYWK TTGKDKEIFN SVTSQLVGMK 180 KTLVFYRGRA PRGEKTNWVM HEYRVHAKAA FRTSKDEWVV CRIFQKSAGA KKYPSNQSRA 240 GNPLYNLEIG PSVMPSQMMQ AADNFQLPIG RNYMMSNAEL QAELARVFRA GGSTGINLPM 300 QSPLTNSYSV GGGAGGCFTV SGLNLNLGGA TSQPALRPMP PPVMNQQDVT PSMMTSTSSY 360 AVEQAAYGAE MNNANGPSNR FMGMQQCMDL ENYWPAY

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MNEVHKLGGA ACVLVFLTLS TSYCSLPLEP RPEQSWLADV EETYWLLGIW IQNPISDKGK  60
KQIGKEKDME GDAKEETLPP GFRFHPTDEE LITYYLQNKI SDADFSCRAI GDVDLNKCEP  120
WDLPGKAKMG EKEWYFFSLR DRKYPTGVRT NRATNTGYWK TTGKDKEIFN SVTSQLVGMK  180
KTLVFYRGRA PRGEKTNWVM HEYRVHAKAA FRTSKDEWVV CRIFQKSAGA KKYPSNQSRA  240
GNPLYNLEIG PSVMPSQMMQ AADNFQLPIG RNYMMSNAEL QAELARVFRA GGSTGINLPM  300
QSPLTNSYSV GGGAGGCFTV SGLNLNLGGA TSQPALRPMP PPVMNQQDVT PSMMTSTSSY  360
AVEQAAYGAE MNNANGPSNR FMGMQQCMDL ENYWPAY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-57	77	232	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-57	77	232	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-57	77	232	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-57	77	232	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-57	77	232	19	174	NAC domain-containing protein 19
3swm_B	6e-57	77	232	19	174	NAC domain-containing protein 19
3swm_C	6e-57	77	232	19	174	NAC domain-containing protein 19
3swm_D	6e-57	77	232	19	174	NAC domain-containing protein 19
3swp_A	6e-57	77	232	19	174	NAC domain-containing protein 19
3swp_B	6e-57	77	232	19	174	NAC domain-containing protein 19
3swp_C	6e-57	77	232	19	174	NAC domain-containing protein 19
3swp_D	6e-57	77	232	19	174	NAC domain-containing protein 19
4dul_A	6e-57	77	232	16	171	NAC domain-containing protein 19
4dul_B	6e-57	77	232	16	171	NAC domain-containing protein 19
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011045043.1	0.0	PREDICTED: NAC domain-containing protein 100-like isoform X3
TrEMBL	A0A2K1WTU1	0.0	A0A2K1WTU1_POPTR; Uncharacterized protein
STRING	POPTR_0018s03910.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5073	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-118	NAC domain containing protein 38