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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | CCG001259.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 341aa MW: 37470.9 Da PI: 6.7844 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 29.5 | 1.4e-09 | 251 | 294 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
++ ++RR+ri +++ L++l+P+ K++ +++LekA+ Y+k Lq
CCG001259.1 251 IAAKNRRERISERLKMLQDLVPNG-----SKVDLVTMLEKAISYVKFLQ 294
5679*******************5.....5******************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 15.345 | 244 | 293 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 1.15E-13 | 245 | 303 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 1.23E-11 | 246 | 298 | No hit | No description |
| Gene3D | G3DSA:4.10.280.10 | 1.3E-12 | 246 | 301 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 5.3E-12 | 250 | 299 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 1.1E-6 | 252 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 341 aa Download sequence Send to blast |
MALAKDRMDS VQTCALYGNV MGRTCALYGN VMGDLSSLGP NYGFDEEGDR NFEKNSGLMI 60 KNLAMSPSPP PLGSPSSANS GELVFQATDN QVEEAHSLIN FKGTGFDSIM HANGSLISFE 120 QSNRVSQTSS HKDDYSAWEG NLSCNYQWNQ INPKCNANPR LMEDLNCYQS ASNFNSITNS 180 AEKENHGDWL YTHESTIVTD SIPDSATPDA SSFHKRPNMG ESMQALKRQR DIATKKQKPK 240 SAGPAKDPQS IAAKNRRERI SERLKMLQDL VPNGSKVDLV TMLEKAISYV KFLQLQVKVL 300 ATDEFWPVQG GKAPDISQVK GAIDAILSSQ TKDRNSNSST K |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011021422.1 | 0.0 | PREDICTED: putative transcription factor bHLH086 | ||||
| TrEMBL | A0A2K1X763 | 0.0 | A0A2K1X763_POPTR; Uncharacterized protein | ||||
| STRING | POPTR_0005s14360.1 | 0.0 | (Populus trichocarpa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF4937 | 32 | 53 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G37800.1 | 4e-68 | RHD SIX-LIKE 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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