PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001161.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 265aa    MW: 30062.6 Da    PI: 6.5147
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001161.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-09158205455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+++Er RR++iN+++  L++l+P +    ++ +  a +Le+ ++Y++sLq
  CCG001161.1 158 SHSIAERVRREKINNKLRCLQDLVPGC----HRSMGMAVMLEEIINYVHSLQ 205
                  7*************************9....899****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.93E-10152209No hitNo description
Gene3DG3DSA:4.10.280.105.7E-17152218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16152219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.078154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-7158205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-9160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAEFAEYQQR FRLSQPLTEM MDMNMEMLKH LPELNPSILE SFSITDFSAD SLLARQQPEF  60
TATYDHNNLS STFHPDILST ATVVHTVTLN QNDSHDSKKR KSMELSTSSY ISPTASTNET  120
KKKNNLGGSK KGENKEKEGD KAEEVIHVRA KRGQETDSHS IAERVRREKI NNKLRCLQDL  180
VPGCHRSMGM AVMLEEIINY VHSLQNQVEF LSMELAAASS SNDLNNVTES SKRAQGTDST  240
EAQKTQKWLR ERYGEITCFH SAWSI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021250.10.0PREDICTED: transcription factor bHLH75-like
TrEMBLU5GG630.0U5GG63_POPTR; Uncharacterized protein
STRINGPOPTR_0005s15590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144121218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.16e-45bHLH family protein