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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | CCG001083.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family | NAC | ||||||||
| Protein Properties | Length: 1291aa MW: 147877 Da PI: 5.9838 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 141.6 | 4.5e-44 | 714 | 836 | 5 | 128 |
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101
+rF Ptd elv +yLk+k+ +k++el ++i++vd+yk++P++Lp ++ +++ +wyfFs+rd++y+tg r+nr t++g Wkatg+d++++ +++++g
CCG001083.1 714 LRFAPTDVELVLYYLKRKICEKRFEL-DIIRDVDVYKWDPEELPeLSTLESDWQWYFFSPRDRRYHTGARSNRETRQGWWKATGRDRSIVY-NSRNIG 809
7*************************.99***************43444456699************************************.999*** PP
NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
+kktLvfy+g ap+ge+tdW m+ey+l
CCG001083.1 810 IKKTLVFYRGCAPRGERTDWKMQEYTL 836
*************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF52200 | 4.84E-47 | 68 | 221 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
| Gene3D | G3DSA:3.40.50.10140 | 7.0E-29 | 75 | 195 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
| PROSITE profile | PS50104 | 32.56 | 77 | 218 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
| SMART | SM00255 | 9.6E-47 | 78 | 218 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
| Pfam | PF01582 | 1.2E-49 | 79 | 249 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
| SuperFamily | SSF52540 | 4.25E-25 | 240 | 390 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF00931 | 9.3E-10 | 273 | 374 | IPR002182 | NB-ARC |
| Gene3D | G3DSA:3.40.50.300 | 1.9E-6 | 277 | 376 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| PRINTS | PR00364 | 6.7E-17 | 277 | 292 | No hit | No description |
| PRINTS | PR00364 | 6.7E-17 | 353 | 367 | No hit | No description |
| Gene3D | G3DSA:3.80.10.10 | 1.4E-9 | 394 | 543 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SuperFamily | SSF52058 | 1.19E-41 | 394 | 715 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 9.3E-25 | 544 | 716 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| PRINTS | PR00364 | 6.7E-17 | 608 | 624 | No hit | No description |
| SuperFamily | SSF101941 | 8.89E-49 | 709 | 859 | IPR003441 | NAC domain |
| PROSITE profile | PS51005 | 46.297 | 710 | 859 | IPR003441 | NAC domain |
| Pfam | PF02365 | 4.1E-21 | 714 | 836 | IPR003441 | NAC domain |
| SuperFamily | SSF52540 | 6.28E-39 | 859 | 1019 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF00931 | 1.6E-23 | 862 | 1026 | IPR002182 | NB-ARC |
| SuperFamily | SSF46785 | 7.34E-16 | 996 | 1100 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
| Gene3D | G3DSA:3.40.50.300 | 4.9E-4 | 1047 | 1127 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF01582 | 1.7E-5 | 1207 | 1280 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
| SuperFamily | SSF52200 | 2.09E-7 | 1208 | 1278 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0007165 | Biological Process | signal transduction | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| GO:0043531 | Molecular Function | ADP binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 1291 aa Download sequence Send to blast |
MRVRYPLYSF STFPPPKVHL LYGEQALNKI AWKAIPEPSE LVEASRDRYY FIAIGIFMAS 60 IIVQGITSSS SSSPPQYMYD VFLSFRGKDT RNNFTSHLYS NLKQKGIDVY MDDRELERGK 120 TIEDALWKAI EESRFSVIVF SRDYASSPWC LDELVKIVQC MKETGHTVLP VFYDVDPSEV 180 AEQKGQYEKA FVEHEQNFKE NLEKVRNWKD CLSTVANLSG WDVRNRNESE SIKIIAEYIS 240 YKLSVTLPTI SKKLVGIDSR VEVLNGYIGE EVGKAIFIGI CGMGGIGKTT VARVLYDRIR 300 WQFEGSCFLA NVREVFAEKY GPRRLQEQLL SEILMERASV CDSSRGIEMI KRRLRLKKIL 360 LILDDVDDKE QLEFLEKEKI EAIFLDMPRI KEAQWNMKAF SKMSRLRLLK INNLQLSEGP 420 DDLSNELRFL EWHSYPSKSL SAGLQVDELV ELHMAHSSIE QLWYGYKSAV NLKIINLSNS 480 LNLIKTPDFT GIPNLENLIL EGCTSLSEVH PSLASHKNIQ YVNLVNCKSV RILPSNLEME 540 SLKVFTLDGC SKLEKFPDIV GNMNKLMVLR LDETGITKLS SSIHHLIGLG LLSMNNCKNL 600 ESIPSSIGCL KSLKKLDLSC CSALKNIPEN LGKVESLEEF DVSGTSIRQP PASIFLLKSL 660 KVLSFDGCKR IAVNPTDQRL PSLSGLCSLE VLDLCACNLR EGSLPEDIGF LSSLRFAPTD 720 VELVLYYLKR KICEKRFELD IIRDVDVYKW DPEELPELST LESDWQWYFF SPRDRRYHTG 780 ARSNRETRQG WWKATGRDRS IVYNSRNIGI KKTLVFYRGC APRGERTDWK MQEYTLNEEE 840 LRGEANVQDF YALYKLCKKG IEMIKRKLQR KKIPVVLDDV DDRKQLESLA AESKWFGPGS 900 RIIITSRDRQ VLTRNGVARI YEAEKLNDDD ALMLFSQKAF KNDQPAEDFV ELSKQVVSYA 960 NGLPLALEVI GLFMHGRSIL EWGSAINRLN DIPDREIIDV LRISFDGLHE LEKKLFLDIA 1020 CFLKGFKKDG IIRILDNCGF HAHMGTQVLI EKSLTSVSRD QVWMHNLLQI MGKEIVRCES 1080 PEEPGRRSRL WTYEDVCLAL MDNTLQEWQH ESFSNIELSF HSYEQGVKVK NCGVCLLSSL 1140 YMKPQTSAHF IVTSKEAASS YKDSLAFSSS YHEWMANVFP VTSVADASDA FNYLNSDLAL 1200 GFIIDCASLP WYFDELVRIV GFMDEMRSDT VFPVSYDVEQ SKMDDQTVSY TIVFDKNEKN 1260 LRENEEKVQR WTNILSEVEI SSGSKGNNYF E |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5ku7_A | 9e-50 | 72 | 243 | 1 | 169 | TIR-NB-LRR type resistance protein RPV1 |
| 5ku7_B | 9e-50 | 72 | 243 | 1 | 169 | TIR-NB-LRR type resistance protein RPV1 |
| Search in ModeBase | ||||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | DQ513223 | 0.0 | DQ513223.1 Populus trichocarpa clone 611654 TIR-NBS-LRR-TIR type disease resistance protein mRNA, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011021443.1 | 0.0 | PREDICTED: TMV resistance protein N-like | ||||
| TrEMBL | U7DYH5 | 0.0 | U7DYH5_POPTR; Uncharacterized protein | ||||
| STRING | POPTR_0043s00270.1 | 0.0 | (Populus trichocarpa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3 | 9 | 10 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G34190.1 | 3e-50 | NAC domain containing protein 17 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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