PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG001062.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 310aa MW: 34202.9 Da PI: 4.9758

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG001062.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53	6.1e-17	43	92	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR++iN++f+ Lr l+P++ ++K +Ka+ L +++eY++ Lq CCG001062.1 43 RSKHSETEQRRRSKINERFQALRNLVPQN----DQKRDKASFLLEVIEYVQFLQ 92 899***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.2E-23	40	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.212	41	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-19	41	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.86E-16	43	96	No hit	No description
Pfam	PF00010	1.7E-14	43	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.2E-13	47	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MVKSTKSHLD EEDEAEDYDS SSYKEEAAKA ESKSNELKAN ANRSKHSETE QRRRSKINER 60 FQALRNLVPQ NDQKRDKASF LLEVIEYVQF LQDKLQIYEG SYEGWSQEPA KLLPWKNYSA 120 SAESRLGHTQ VMKSGSAHEN TVMLGNVHNS IKSDIDTAAM YKTLDHSPGP TNPAIPFDVQ 180 TQSCVFAAVG RGGVSTESLQ ESVSDAENMA YQLQSQLLQP CATECITPNN TLNGQEDMAS 240 DSRSVNISNA YSKQILNTLT QALQSSGVDL AQTSITVQID VGKRENGTNA VAPSSKVYFC 300 DPKLIVAIPI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011021100.1	0.0	PREDICTED: transcription factor BIM2-like isoform X2
TrEMBL	A0A3N7H635	0.0	A0A3N7H635_POPTR; Uncharacterized protein
STRING	POPTR_0017s13610.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1730	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G38860.1	7e-57	BES1-interacting Myc-like protein 3