PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

M-type_MADS

Protein Properties

Length: 86aa MW: 9773.57 Da PI: 10.8086

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG001045.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.2	6.8e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr+g+lKKA+E+SvLCda+vavi+fs++gkl+eys+ CCG001045.1 9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDADVAVIVFSTKGKLFEYST 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	31.595	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.9E-39	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.21E-36	2	61	No hit	No description
SuperFamily	SSF55455	3.92E-29	2	61	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.5E-31	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.8E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.5E-31	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.5E-31	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 86 aa Download sequence Send to blast
MGRGRVQLKR IENKISRQVT FSKRRTGLLK KAHEISVLCD ADVAVIVFST KGKLFEYSTD 60 SRFFLSSCLT PLKLSPFLFL HVDLAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	7e-19	1	60	1	61	MEF2C
5f28_B	7e-19	1	60	1	61	MEF2C
5f28_C	7e-19	1	60	1	61	MEF2C
5f28_D	7e-19	1	60	1	61	MEF2C
6bz1_A	8e-19	1	60	1	61	MEF2 CHIMERA
6bz1_B	8e-19	1	60	1	61	MEF2 CHIMERA
6bz1_C	8e-19	1	60	1	61	MEF2 CHIMERA
6bz1_D	8e-19	1	60	1	61	MEF2 CHIMERA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY515153	1e-91	AY515153.1 Populus deltoides APETALA-like protein AP1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011021074.1	9e-36	PREDICTED: truncated transcription factor CAULIFLOWER A-like
Swissprot	Q6E6S7	3e-35	AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBL	A0A1R3KTL2	6e-37	A0A1R3KTL2_9ROSI; Transcription factor, MADS-box
STRING	POPTR_0017s13400.1	5e-37	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	3e-36	AGAMOUS-like 8

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]