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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG001042.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 209aa MW: 24423.7 Da PI: 7.7003 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.1 | 2e-18 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll+++v ++G g+W++++r g++R +k+c++rw +yl CCG001042.1 16 KGPWTPEEDKLLIEYVSLHGEGRWSSVSRWPGLNRNGKSCRLRWVNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.8 | 8.8e-17 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ ++++++++lG++ W+tIar+++ gRt++++k++w+++ CCG001042.1 69 RGQITPQEEGIIIELHALLGNK-WSTIARYLP-GRTDNEIKNYWRTH 113 7888******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.403 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-32 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-15 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-16 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-23 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.35E-10 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 23.947 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-13 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 69 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.86E-9 | 73 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MVARMGWGIP EQGWRKGPWT PEEDKLLIEY VSLHGEGRWS SVSRWPGLNR NGKSCRLRWV 60 NYLRPGLKRG QITPQEEGII IELHALLGNK WSTIARYLPG RTDNEIKNYW RTHSKKKETS 120 SQKQEKRKAQ ILKQEEEHQQ HLLQLEAGDV KMVNTIAHEK MPEAPEIMYP TLEDQCLPVM 180 SQDVVSWADS VVEDYNRLWG GFWNLDDHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-26 | 8 | 117 | 1 | 107 | B-MYB |
1h8a_C | 1e-25 | 16 | 117 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011021440.1 | 1e-154 | PREDICTED: transcription factor MYB48-like | ||||
Swissprot | Q9LX82 | 2e-47 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A2K2AT89 | 1e-109 | A0A2K2AT89_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s13370.1 | 1e-120 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 1e-63 | myb domain protein 121 |
Publications ? help Back to Top | |||
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