PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG001024.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bZIP

Protein Properties

Length: 387aa MW: 42015.3 Da PI: 6.6589

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG001024.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.4	8.2e-10	189	238	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l+ + CCG001024.1 189 KRAKRILANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLSLFQR 238 9*****************************************99987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.9E-16	185	249	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.622	187	250	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.5E-8	189	243	No hit	No description
Pfam	PF00170	1.1E-8	189	241	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.74E-10	189	240	No hit	No description
CDD	cd14703	1.04E-22	190	239	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
METRDQLSKP PQNSDPQKPN NPNPNPTVSP SSSSSSSSMF NNIRGGAHHR RAHSEMSFRL 60 PEDMTLMMTD LHPSDQINGG NGNGNGGSST GSLEEIGSED DLFSTYIDVD KLTGGNNGNG 120 TGVGNHNDND NTLNGEKGGV SSAGPGTSRP KHRHSYSVDG SVFGGGEVME AKKAMPPDKL 180 AELWSIDPKR AKRILANRQS AARSKERKAR YILELERKVQ TLQTEATTLS AQLSLFQRDT 240 TGLSTENTEL KLRLQAMEQQ AQLRDALNEA LKKEVERLKI ATGEMLSPSD SYNLGMHQMP 300 FTPSNFFPLP LQPGTAGHPN MQLPSFTHSS SSMSTRHIHQ VDSQSLSDYI QNDPIRQLQG 360 LDISNKGSNI VKSEGPSLSA SENSSTF

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

METRDQLSKP PQNSDPQKPN NPNPNPTVSP SSSSSSSSMF NNIRGGAHHR RAHSEMSFRL  60
PEDMTLMMTD LHPSDQINGG NGNGNGGSST GSLEEIGSED DLFSTYIDVD KLTGGNNGNG  120
TGVGNHNDND NTLNGEKGGV SSAGPGTSRP KHRHSYSVDG SVFGGGEVME AKKAMPPDKL  180
AELWSIDPKR AKRILANRQS AARSKERKAR YILELERKVQ TLQTEATTLS AQLSLFQRDT  240
TGLSTENTEL KLRLQAMEQQ AQLRDALNEA LKKEVERLKI ATGEMLSPSD SYNLGMHQMP  300
FTPSNFFPLP LQPGTAGHPN MQLPSFTHSS SSMSTRHIHQ VDSQSLSDYI QNDPIRQLQG  360
LDISNKGSNI VKSEGPSLSA SENSSTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214418	0.0	AC214418.1 Populus trichocarpa clone POP106-D21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011021041.1	0.0	PREDICTED: transcription factor RF2b-like isoform X1
Swissprot	O22873	1e-101	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A2I4KKZ6	0.0	A0A2I4KKZ6_POPTR; BZIP family protein
STRING	POPTR_0013s15280.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	2e-98	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]