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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG000925.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | CPP | ||||||||
Protein Properties | Length: 744aa MW: 81893.6 Da PI: 6.4267 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 51 | 2.9e-16 | 450 | 488 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkkskClk+YCeCfaag++C e C C+dC+Nk CCG000925.1 450 ACKRCNCKKSKCLKLYCECFAAGVYCIEPCACQDCFNKP 488 589**********************************96 PP | |||||||
2 | TCR | 50.1 | 5.6e-16 | 535 | 573 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN CCG000925.1 535 RHKRGCNCKKSSCLKKYCECYQGGVGCSLNCRCEGCKNA 573 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.4E-18 | 449 | 490 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.259 | 450 | 575 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.1E-11 | 452 | 487 | IPR005172 | CRC domain |
SMART | SM01114 | 4.4E-17 | 535 | 576 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.4E-11 | 537 | 573 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 744 aa Download sequence Send to blast |
MDTPEKTQIT SPLSKFEDSP VFNYINSLSP IKPVKSINIA HTFHSLSFAS LPSVFTSPHV 60 NSHKETRFLK RHNYADLSKP EFSSENGNEA CSDERVAVDA AQLYDNSSEL LESFDPGVSI 120 REASVEPPSE HLKLAIELPR TLKYDCGTPD SDQTPRCGTQ TDTVSKSDGT IASLVPFTDV 180 ASHKDSPEAQ VHLAGLYKIE SKKEAAECDW ENFISDSADL LIFNSPIDAE GFKELFQKSP 240 NPVVGFCSSF SEVQKMQIVN PIAPGEQDEK EDPFTQPGET IELTQMDPTQ DNLAANKDLN 300 KYIISNPSKA VSNLHRGMRR RCLDFEMVGA RRKNIEDGSS SSSVVVQSDE KITYKNTQLV 360 PFKPSSDSSR CILPGIGLHL NALAINSRDS KKIKHETFSS SITLPGSAAS FHSPTSGQEL 420 DESLALASTE RDMDPSDNVV PHRLEGEAEA CKRCNCKKSK CLKLYCECFA AGVYCIEPCA 480 CQDCFNKPIH EDTVLATRKQ IESRNPLAFA PKVIRSSEPA PEIGDESSKT PASARHKRGC 540 NCKKSSCLKK YCECYQGGVG CSLNCRCEGC KNAFGRKDGS ASVDMEDEHE DETDASEKNG 600 VDKTLQKAEI QNNDEQHPNS ALPTTPLRFS RPLVQLPYSS KGKPPRCFLG VGSSSGLYTG 660 QRYGKPNIFR PQWKFEKQFQ NVPEDEIPEI LRENHSPSSG IKTSPNSKRV SPPQSNLGSS 720 PGRRSGRKLI LQSIPSFPSL TPHH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 3e-17 | 454 | 572 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 3e-17 | 454 | 572 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC217586 | 0.0 | AC217586.1 Populus trichocarpa clone POP025-M11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011026909.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A2K1ZHX5 | 0.0 | A0A2K1ZHX5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s15590.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2619 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-171 | TESMIN/TSO1-like CXC 2 |