PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000658.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 500aa    MW: 56097.8 Da    PI: 6.2299
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000658.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.22.2e-05235336
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg 36
                 e++C+ +   +   +C+ +  +lC +C  + H+ 
  CCG000658.1  2 EKVCEFCMALRPVVYCNADAAYLCLSCDAKVHSA 35
                 679******99*****************999954 PP
2CCT319.4e-12463500138
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKG 38 
                  Re+a++RYkeK+k R  +K+irY  RK   + R+R +G
  CCG000658.1 463 RENAMMRYKEKKKARMQDKQIRYTPRKPKNDVRKRGNG 500
                  9*********************************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.745147IPR000315B-box-type zinc finger
SMARTSM003360.0016147IPR000315B-box-type zinc finger
CDDcd000215.31E-4435No hitNo description
PROSITE profilePS501198.5744387IPR000315B-box-type zinc finger
SMARTSM003362.54887IPR000315B-box-type zinc finger
PfamPF062035.0E-7463500IPR010402CCT domain
PROSITE profilePS5101710.516463500IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MEKVCEFCMA LRPVVYCNAD AAYLCLSCDA KVHSANALFN RHLRTLLCDS CRNHPAYAQC  60
LDHRMLMCLG CDRCLHEVSS HHQKRLVSSY LGCPSAKDFA SLWGFEFGDL DKSIVKDQLV  120
STPCSSSVQP SASKFDIPGK SCQQIGRSSR KSRMIHSTLV SGAESDVGSG NQQPELSYKV  180
PQQESTCFIL EQILDLKRLQ LTDVNNSTPM KRGQEQKYVS SMLNTSKKLD YNLNHSQHSQ  240
DLVTNLQQAD CQLQGLKVDS LPLPFSQPEH LPFFSTAANA LPGESFWPCK SPIENSQLWS  300
QNMQDLGVCE DIICHDDNYI IPDVDKTFCN FEEFFGGDQD PTGAFLDEND FSCSFIEKDM  360
PPEKSNNSGG RARKDASVTS SVYISCSVHI DNDKDPSNQS YNFPGSLDPA QTIRSPYSRY  420
SISSHGAESR SNEYLDSELS LYISNGEASC YSPDLEDAHT EARENAMMRY KEKKKARMQD  480
KQIRYTPRKP KNDVRKRGNG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022637.10.0PREDICTED: putative zinc finger protein At1g68190 isoform X1
TrEMBLA0A1L6K4S50.0A0A1L6K4S5_POPTO; Uncharacterized protein
STRINGPOPTR_0008s12410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF869244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-28B-box type zinc finger protein with CCT domain