PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000595.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family RAV
Protein Properties Length: 369aa    MW: 41373.4 Da    PI: 9.3656
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000595.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.57.9e-1469117155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  CCG000595.1  69 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDTAAQRFRG 117
                  89****9888.8*********3.....5**********99*************98 PP
2B3100.41e-31205306196
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+ tpsdv+k++rlv+pk++ae+h      ++ +++++ l led sg++W+++++y+++s++yvltkGW++Fvk++ Lk+gD+v F+++   +++l
  CCG000595.1 205 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqgtSSCSTKGVLLNLEDMSGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLKAGDIVCFQRSTGPDKQL 302
                  89**************************9887555668999************************************************886677777 PP

                  EEEE CS
           B3  93 vvkv 96 
                  ++ +
  CCG000595.1 303 YIDW 306
                  7776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-1769125IPR016177DNA-binding domain
CDDcd000181.37E-2669127No hitNo description
PfamPF008476.0E-969117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-2170126IPR001471AP2/ERF domain
SMARTSM003801.5E-2970131IPR001471AP2/ERF domain
PROSITE profilePS5103220.27170125IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.2E-40200312IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-31203308IPR015300DNA-binding pseudobarrel domain
CDDcd100173.19E-30204295No hitNo description
SMARTSM010192.7E-24205310IPR003340B3 DNA binding domain
PfamPF023621.0E-28205306IPR003340B3 DNA binding domain
PROSITE profilePS5086314.339205310IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDGSCVDEST TSSTDNSISI KPTSLTPSLP PATTTKSPPE SLCRVGSGNS VILDLESGVE  60
AESRKLPSSK YKGVVPQPNG RWGAQIYEKH QRVWLGTFNE EDEAARAYDT AAQRFRGRDA  120
VTNFKQVNET EDDEIEAAFL ITHSKAEIVD MLRKHTYSDE LEQSKRNHRS NNGVNGKQYK  180
NTANYGSNSY DHGCGRVLKA REQLFEKAVT PSDVGKLNRL VIPKQHAEKH FPLQGTSSCS  240
TKGVLLNLED MSGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKSLKAGDIV CFQRSTGPDK  300
QLYIDWKARS GSNQVHPVQP IQMVRLFGVN IFNVPGMENG CNGKRSVREM ELLSLDHQYS  360
KKQRIIGAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-5920231311121DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164682e-53AC216468.1 Populus trichocarpa clone POP034-E14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021709.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like
SwissprotQ9C6M51e-153RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A2K1ZFR10.0A0A2K1ZFR1_POPTR; Uncharacterized protein
STRINGPOPTR_0008s11600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-152RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]