PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

CCG000565.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bZIP

Protein Properties

Length: 200aa MW: 22857.6 Da PI: 7.7725

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG000565.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.6	3.6e-15	84	133	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +++rr+++NRe+ArrsR RK++ ++eL + v L +eN+ L+++l++ ++ CCG000565.1 84 RKQRRMISNRESARRSRMRKQKHLDELWTQVVRLRTENHNLIDKLNHVSE 133 79*******************************************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.1E-16	80	144	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.542	82	133	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.94E-13	84	133	No hit	No description
Pfam	PF00170	6.1E-13	84	142	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.8E-13	84	157	No hit	No description
CDD	cd14702	6.76E-20	85	136	No hit	No description
PROSITE pattern	PS00036	0	87	102	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MLPGELTGIH YIAPDQSLIP FPANFGMMQQ SSIPAFHFNR LLNNLQSSSF PQPVREFTPQ 60 SSSLSNNSTS DESEEHQLSI IDERKQRRMI SNRESARRSR MRKQKHLDEL WTQVVRLRTE 120 NHNLIDKLNH VSECHDRVLQ ENARLKNEAS DLRQMVTDLQ IGSPYTATAL RDLAEVPCNT 180 AHVRSKSSNQ SVTSSVDLLH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	103	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011021268.1	1e-147	PREDICTED: basic leucine zipper 43-like
Swissprot	Q9FMC2	6e-37	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	B9HIW1	1e-134	B9HIW1_POPTR; BZIP family protein
STRING	POPTR_0008s11260.1	1e-135	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1604	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13600.1	2e-41	basic leucine-zipper 58

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]