PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000564.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 738aa    MW: 80221.9 Da    PI: 5.5581
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000564.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.9e-09384432355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  CCG000564.1 384 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 432
                  58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.11E-11379436No hitNo description
SuperFamilySSF474591.31E-16379449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485381431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16382448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-6384432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10387437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS513755.788582616IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.377617647IPR002885Pentatricopeptide repeat
PfamPF015359.2E-4620644IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.7E-4620644IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.022648682IPR002885Pentatricopeptide repeat
PfamPF130416.2E-11648695IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.7E-8650684IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MDMSDKDKFE FEESNDNRIN YRSPGGMSLD RRFNSTSIPN SSLGLVPTDN QTSVCRGDLA  60
VAASCSSASV IDSFGPAMWE HPTNSQNLVF CDINVQNIAS SSNTAGIGKG VPASLRNGID  120
RTLEMGWNPP NPMLKGGNFL PNASGMLPQS SSQLPADSAF IERAARFSCF NGGNFSDMGN  180
PFGVHESMGL FSRGGGMMQG PGEVFMGSGM KSVSGGRAPK NVMNAVEASE DVSMSVNHMA  240
TEGSPLKNET KSDSLARSRD EAKQRMGGSA NDSDEAEFSG GGGEEDEPSM LEGNCRELSA  300
KSVGSNKRKR NGQGQDAELD QAKGTPQSAE TVKGSPETQQ KGDQKPTSTS SKDAGKQGKQ  360
GSLGSDQPKE EYIHVRARRG QATNSHSLAE RVRREKISER MKFLQDLVPG CSKVTGKAVM  420
LDEIINYVQS LQRQVEFLSM KLATVNPRLD LNIEGLLAKD VFDPKILQLH AVPPSSLAFS  480
LEMPMAYPPS HPSQPGLIPT AFPGMDNHSD IIRRTINSQL TPMTAGFKEP APLPNVWDDE  540
LRNVVQMSYG TSAPHDSQDV NKLLPPGHLK FCDMQKNGIQ LDHFTLGSVI NSRANLASLE  600
EGAQFYCQVL VSGLIYFITV YNALITLYGK RGSTEDSNQL FNEMNFTDEV SWTALISGYA  660
QSGKAHETVD LFERMLAQGL KPDAVTFIAV LSACSRPGLV LRWREENSES MLKDHGIIRF  720
YDHYSCMIDP FSRAGRLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D4e-2557173840306PLS9-PPR
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1468110.0EF146811.1 Populus trichocarpa clone WS01214_F06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021251.10.0PREDICTED: transcription factor bHLH49-like isoform X2
TrEMBLA0A2K1ZFJ70.0A0A2K1ZFJ7_POPTR; Uncharacterized protein
STRINGPOPTR_0008s11240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.21e-125bHLH family protein