PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 742aa MW: 84903.3 Da PI: 6.1182

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG000527.3	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.4	6.3e-20	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w+vt +++ HnHe++ CCG000527.3 59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQMKLSEDGKMQRNRKSSRCGCQAYMRIVKRAdfdVPEWRVTGFSNIHNHEMF 152 6*************9998874556679***************9***************98887676789***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-16	59	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-21	275	366	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.495	533	581	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-7	555	579	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.7E-5	556	583	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 742 aa Download sequence Send to blast
MPEGTNMVMG SSEDGTDISQ DDKGTTEETP EDAILLRQTS VNLVPFIGQR FASQDAAYEF 60 YCSFAKQCGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGYP QMKLSEDGKM QRNRKSSRCG 120 CQAYMRIVKR ADFDVPEWRV TGFSNIHNHE MFKLNETHLL PASCIMSPDD KSRICIFAKA 180 GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLLSFRNFN QDNDAIDLIA MCKKLKDEDH 240 NFKYDFKIDC NNRLEHIAWS SASSVRLYEA FGDAVVFDTT QHLDAYDMWL GIWVGVDNHG 300 MTCFFSCVLL REENMESFSW ALKAFVNFMN GKAPQTILTD QNMWLKEAIA IEMPDTKHAF 360 CIWHIISKFS DWFSILLGSC YDDWKAEFLR LYNLESVQDF EEGWNEMVEK YELHANKHIT 420 SLYAFRSFWA LSFLRNYFFG GTTDIYQSGS ITAFIQQFLS AQSRLDYFVE ELADIVDFKP 480 ELPQKLHKVY LKTGSPIESH AASVLTPYAL GKFQEELVLA PQYASFPVDE YCFQVRHHTQ 540 ISGGCKVIWD SCQGHISCSC SWFEYSGILC RHVLRVLSTN NCFQIPDNYL PIRWQCVSSS 600 YSSRMHSEKI QSLESMASTL MAESVETDER LDVACEQISL VLSHIRDLPR QTHGESAYNC 660 PPDSLILPEV EDSRGIANFT IENPDDPITL AKLKDRLPRV GVDISRRRRH HSGPCCGHFG 720 HDASDCPVTR SDQMNGTTLG YL

Sequence ? help Back to Top

Protein Sequence Length: 742 aa Download sequence Send to blast

MPEGTNMVMG SSEDGTDISQ DDKGTTEETP EDAILLRQTS VNLVPFIGQR FASQDAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGYP QMKLSEDGKM QRNRKSSRCG  120
CQAYMRIVKR ADFDVPEWRV TGFSNIHNHE MFKLNETHLL PASCIMSPDD KSRICIFAKA  180
GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLLSFRNFN QDNDAIDLIA MCKKLKDEDH  240
NFKYDFKIDC NNRLEHIAWS SASSVRLYEA FGDAVVFDTT QHLDAYDMWL GIWVGVDNHG  300
MTCFFSCVLL REENMESFSW ALKAFVNFMN GKAPQTILTD QNMWLKEAIA IEMPDTKHAF  360
CIWHIISKFS DWFSILLGSC YDDWKAEFLR LYNLESVQDF EEGWNEMVEK YELHANKHIT  420
SLYAFRSFWA LSFLRNYFFG GTTDIYQSGS ITAFIQQFLS AQSRLDYFVE ELADIVDFKP  480
ELPQKLHKVY LKTGSPIESH AASVLTPYAL GKFQEELVLA PQYASFPVDE YCFQVRHHTQ  540
ISGGCKVIWD SCQGHISCSC SWFEYSGILC RHVLRVLSTN NCFQIPDNYL PIRWQCVSSS  600
YSSRMHSEKI QSLESMASTL MAESVETDER LDVACEQISL VLSHIRDLPR QTHGESAYNC  660
PPDSLILPEV EDSRGIANFT IENPDDPITL AKLKDRLPRV GVDISRRRRH HSGPCCGHFG  720
HDASDCPVTR SDQMNGTTLG YL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011020547.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X3
Refseq	XP_011020554.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X3
Refseq	XP_011020561.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X3
Refseq	XP_011020570.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X3
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A3N7FDY0	0.0	A0A3N7FDY0_POPTR; Uncharacterized protein
STRING	POPTR_0008s10810.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]