PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG000407.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 509aa MW: 56033.7 Da PI: 8.6539 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.3 | 0.0005 | 444 | 466 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F++ L H r+H CCG000407.1 444 HECPFCPKVFRSGQALGGHKRSH 466 78******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.91E-5 | 6 | 34 | No hit | No description |
SMART | SM00355 | 0.31 | 9 | 31 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 9.9E-5 | 9 | 27 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.369 | 9 | 36 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 11 | 31 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.912 | 94 | 117 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.5 | 94 | 116 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 6.85E-8 | 95 | 116 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 96 | 116 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.5E-6 | 96 | 118 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.85E-8 | 439 | 466 | No hit | No description |
Pfam | PF13912 | 3.7E-10 | 443 | 466 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.39 | 444 | 466 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.016 | 444 | 466 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 446 | 466 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
METNQKNNFV CKYCNKRYPC GKSLGGHIRI HLNANGTCST DEDAKVKMST TENKSKQISV 60 SEAGGQFGYA LRENPKKTTR FVLDSSKTTS LPEKLCKECG KGFQSLKALC GHMACHSKNF 120 FQDQSGATMK LKGITMDKQS DSETTDPMER RRSKRMRYKA IDVYTSSLSL TNTASLSSTS 180 DIEQEQEEVA KSLMMLSKDS GFKGCFSSVA DSSDNNSVVL EGKSSSMKMR INVNDGINFV 240 SSGIESLEMK KATQRGVNSS ENDQSENSDS GYFRNGPKKV GSDVSVHGFA RNGEFKKQEV 300 DSVFSYDDEL DAESGKRLSM SRHIRTQLGK DFIVDDVYNQ GDRALMDSQK GCKNESCEYK 360 SSSVRNRGSK CVSLGGRRTI HNRINGCSDS IYESGENSVD TDYVPNPIAN SSKMIQSRSG 420 KTPIEKSSSG KAEKKLGLKI EKVHECPFCP KVFRSGQALG GHKRSHFIGA ARVRPVVIEQ 480 DVPEISTRGL IDLNLPVSTE EESDGLGPW |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011018421.1 | 0.0 | PREDICTED: uncharacterized protein LOC105121467 | ||||
TrEMBL | B9HID5 | 0.0 | B9HID5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s09410.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1101 | 30 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 5e-21 | C2H2-like zinc finger protein |